View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12019_low_3 (Length: 715)
Name: NF12019_low_3
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_3 |
 | |
|
| [»] scaffold0186 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 397 - 707
Target Start/End: Original strand, 2461512 - 2461840
Alignment:
| Q |
397 |
gggttttaaaaccgaatcgaattcccctttcttcagatgggcacgagtctgatctgattactttgttagaaaagaaaagaagttgaaattttcaaaagct |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2461512 |
gggttttaaaaccgaatcgaattcccctttcttcagatgggcacgagtctgatctgattactttgttagaacagaaaagaagttgaaattttcaaaagct |
2461611 |
T |
|
| Q |
497 |
aagaatattctctaatcaaattgaaacattatcttgtaaatgtcttaatc----------------aaagtgaaagggacagatagcattattagtatca |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2461612 |
aagaatattctctaatcaaattgaaacattatcttgtaaatgtcttcatcaattagtaggtactctaaagtgaaagggacagatagcattattagtatca |
2461711 |
T |
|
| Q |
581 |
atctgtttttcacactatgaagtatacaaacaccagacacgacactactgacacatagacac--tacactatttaagaaaattgaagtaattaaatgcaa |
678 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2461712 |
atctgtttttcacactttgaagtatacaaacaccagacacgacactactaacacatagacactatacactgtttaagaaaattgaagtaattaaatgcaa |
2461811 |
T |
|
| Q |
679 |
tcatacgtgccactgttgtgttgatgtcc |
707 |
Q |
| |
|
| | ||||| ||||||||||||||||||| |
|
|
| T |
2461812 |
ttacacgtgtcactgttgtgttgatgtcc |
2461840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2460056 - 2460268
Alignment:
| Q |
18 |
agattgaatggtttggatctaattgatatttgtgactgctactccctgtccttgttttttctgtttgtcctaaggaataggcaacccataaacataatat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2460056 |
agattgaatggtttggatctaattgatatttgtgactgctactccctgtccttgttttttctgtttgtcctaatgaataggcaacccataaacataatat |
2460155 |
T |
|
| Q |
118 |
agttgattccagtggccggtagaaagagaaagagagatgcttagttgaaagaagcagttgaacaaatatttcatacaaaatgatttataaggttaggtgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2460156 |
agttgattccagtggccggtagaaagagaaagagagatgcttagttgaaagaagcagttgaacaaatatttcgtacaaaatgatttataaggttaggtgc |
2460255 |
T |
|
| Q |
218 |
tctttcttcatct |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2460256 |
tctttcttcatct |
2460268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 246 - 400
Target Start/End: Original strand, 2460382 - 2460536
Alignment:
| Q |
246 |
tcccaattccaccatcaactattaatggtatcatacacagtagctcagtcaaagacaattaaaataacaccttaagtcgcataccgtcaattaaccctcc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |
|
|
| T |
2460382 |
tcccaattccaccatcaactattaatggtatcatacacagtagctcagtcaaagacaattaaaataacaccttaagtcgcataccatcaactaaccctgc |
2460481 |
T |
|
| Q |
346 |
caattttatttatcaaaattcgcctaataattatgcataaagaaccatattgggt |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2460482 |
caattttattcatcaaaattcgcctaataattatgcataaagaaccatattgggt |
2460536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 838 - 1010
Alignment:
| Q |
18 |
agattgaatggtttggatctaattgatatttgtgactgctactccctgtccttgttttttctgtttgtcctaaggaataggcaacccataaacataatat |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
838 |
agattgaatggtttggatctaattcatatttgtggatgctactccctgtccttgttttttctgtttgtccgaaggaataggcaacccataaacataatat |
937 |
T |
|
| Q |
118 |
agttgattccagtggccggtagaaagagaaagagagatgcttagttgaaagaagcagttgaacaaatatttca |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
938 |
agttgattccagtggccggtagaaagagaaagagagatgcttagttgaaagaagcagttgaacaaatatttca |
1010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 1233 - 1279
Alignment:
| Q |
258 |
catcaactattaatggtatcatacacagtagctcagtcaaagacaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1233 |
catcaactattaatggtatcatacacagtagctcagtcaaacacaat |
1279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 4e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 14960945 - 14960785
Alignment:
| Q |
18 |
agattgaatggtttggatctaattgatatttgtgactgctactccctgtccttgttttttctgtttgtcctaaggaataggcaacccataaacataatat |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14960945 |
agattgaatggtttggatctaattcatatttctggatgctactccctgtccttcttttttctgtttgtcctaaggaataggcaacccataaacataatat |
14960846 |
T |
|
| Q |
118 |
agttgattccagtggccggtagaaagagaaagagagatgcttagttgaaagaagcagttga |
178 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14960845 |
agttgattccagtggccggtagaaggagaaagagagatgcttagttgaaagaagcagttga |
14960785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 14960545 - 14960499
Alignment:
| Q |
258 |
catcaactattaatggtatcatacacagtagctcagtcaaagacaat |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14960545 |
catcaactattgatggtatcatacacagtagctcagtcaaacacaat |
14960499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 25862832 - 25862750
Alignment:
| Q |
305 |
taaaataacaccttaagtcgcataccgtcaattaaccctcccaattttatttatcaaaattcgcctaataattatgcataaag |
387 |
Q |
| |
|
||||||| ||||||||||| | ||| |||| ||||| | ||||||||||| |||||||||| || ||||||||||| ||||| |
|
|
| T |
25862832 |
taaaatagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataattatgcttaaag |
25862750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 25888572 - 25888490
Alignment:
| Q |
305 |
taaaataacaccttaagtcgcataccgtcaattaaccctcccaattttatttatcaaaattcgcctaataattatgcataaag |
387 |
Q |
| |
|
||||||| ||||||||||| | ||| |||| ||||| | ||||||||||| |||||||||| || ||||||||||| ||||| |
|
|
| T |
25888572 |
taaaatagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataattatgcttaaag |
25888490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 25481199 - 25481281
Alignment:
| Q |
305 |
taaaataacaccttaagtcgcataccgtcaattaaccctcccaattttatttatcaaaattcgcctaataattatgcataaag |
387 |
Q |
| |
|
||||||| ||||||||||| | ||| |||| ||||| | ||||||||||| |||||||||| || |||||| |||| ||||| |
|
|
| T |
25481199 |
taaaatagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataataatgcttaaag |
25481281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 25607637 - 25607596
Alignment:
| Q |
332 |
tcaattaaccctcccaattttatttatcaaaattcgcctaat |
373 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
25607637 |
tcaactaaccctgccaattttattcatcaaaattcgcctaat |
25607596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 44247431 - 44247468
Alignment:
| Q |
191 |
tacaaaatgatttataaggttaggtgctctttcttcat |
228 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
44247431 |
tacaaaatgattgataaggttagatgctctttcttcat |
44247468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University