View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12019_low_4 (Length: 580)
Name: NF12019_low_4
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_4 |
 | |
|
| [»] scaffold0016 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 72 - 405
Target Start/End: Complemental strand, 7205 - 6879
Alignment:
| Q |
72 |
catttttcacagaagccaaatcttcataacataaaataaataaaaaatccaactaaccgaatcattagctttctcaaaacgaactttaatgattgaacac |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7205 |
catttttcacaaaagccaaatcttcataacatataataaa--aaaaatccaactaaccgaatcattagctttctcaaaatgaactttaatgattgaacac |
7108 |
T |
|
| Q |
172 |
tccttcttatttcttttagagaaatcaacaactttatccaccatcaacaccccatctattataactttttctattaagaattacgattgattcttggata |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
7107 |
tcctt---atttcttttagagaaatcaacaacttcatccaccatcaacaccccatctattataagtttttctattaagaattaagattgattcttggata |
7011 |
T |
|
| Q |
272 |
taattgaatcaattaccactttcatccttttagtaagaacctttgccaaaacatcatagagacttctcaacaaaacaattgggcaaaaatcgtgtaatga |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
7010 |
taattgaatcaattaccactttcatccttttagtaagcacctttgccaaaacatcat--agacttcccaacaaaacaattgggcgaaaatcgtgtaatga |
6913 |
T |
|
| Q |
372 |
gtgtggcatatttaccacgggattagggtaataa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6912 |
gtgtggcatatttaccacgggattagggtaataa |
6879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 7420 - 7363
Alignment:
| Q |
16 |
gaaatcaactcaaacatcctaaggatctctttcatacaccacaaattttctagacaca |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7420 |
gaaatcaactcaaacatcctaaggatctctttcatacaccacaaattttctagacaca |
7363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 522 - 568
Target Start/End: Complemental strand, 6861 - 6815
Alignment:
| Q |
522 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttct |
568 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6861 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttct |
6815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 72 - 405
Target Start/End: Original strand, 23385263 - 23385589
Alignment:
| Q |
72 |
catttttcacagaagccaaatcttcataacataaaataaataaaaaatccaactaaccgaatcattagctttctcaaaacgaactttaatgattgaacac |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23385263 |
catttttcacaaaagccaaatcttcataacatataataaa--aaaaatccaactaaccgaatcattagctttctcaaaatgaactttaatgattgaacac |
23385360 |
T |
|
| Q |
172 |
tccttcttatttcttttagagaaatcaacaactttatccaccatcaacaccccatctattataactttttctattaagaattacgattgattcttggata |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23385361 |
tcctt---atttcttttagagaaatcaacaacttcatccaccatcaacaccccatctattataagtttttctattaagaattaagattgattcttggata |
23385457 |
T |
|
| Q |
272 |
taattgaatcaattaccactttcatccttttagtaagaacctttgccaaaacatcatagagacttctcaacaaaacaattgggcaaaaatcgtgtaatga |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
23385458 |
taattgaatcaattaccactttcatccttttagtaagcacctttgccaaaacatcat--agacttcccaacaaaacaattgggcgaaaatcgtgtaatga |
23385555 |
T |
|
| Q |
372 |
gtgtggcatatttaccacgggattagggtaataa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23385556 |
gtgtggcatatttaccacgggattagggtaataa |
23385589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 23385048 - 23385105
Alignment:
| Q |
16 |
gaaatcaactcaaacatcctaaggatctctttcatacaccacaaattttctagacaca |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385048 |
gaaatcaactcaaacatcctaaggatctctttcatacaccacaaattttctagacaca |
23385105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 522 - 568
Target Start/End: Original strand, 23385607 - 23385653
Alignment:
| Q |
522 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttct |
568 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23385607 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttct |
23385653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University