View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_5 (Length: 524)
Name: NF12019_low_5
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 509
Target Start/End: Original strand, 5084047 - 5084552
Alignment:
| Q |
3 |
gagagagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcgg |
102 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
5084047 |
gagaaagaagaagtagaagaggaaattgaccaatttctaagcatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatctg |
5084146 |
T |
|
| Q |
103 |
tggttatgnnnnnnnnagtactcatcaaagctaagcaagtgaagaagtaatagtagagtgatacagagagaatgcagaggcatgagtcgcaagtgtatag |
202 |
Q |
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|||| ||| | |||| || |||||||||||||||||| ||||| |||||||| ||||||||| |||||||| |||| ||| ||||| |
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| T |
5084147 |
tggtgatgttttttttactacttat---agctaagcaagtgaagaaataataatagagtgaagtagagagaatacagaggcaagagtgaaaagagtataa |
5084243 |
T |
|
| Q |
203 |
tttggccattttcaataagatattaaatgcatgagtctaagcactgatgatgatgatattatatataatattaatatacacaggcttatgtttannnnnn |
302 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5084244 |
cttggccattttcaatacgatattatatgcatgagtctaagcactgatgatgatgatattatatataatattaatatacacaggcttatgtttatttatt |
5084343 |
T |
|
| Q |
303 |
nn--ccttcaaaattaaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgta |
400 |
Q |
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| T |
5084344 |
ttttccttcaaaattaaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgta |
5084443 |
T |
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| Q |
401 |
aggatccaaaatgtttccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacacaca |
500 |
Q |
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| T |
5084444 |
atgatccaaaatgtttccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacataca |
5084543 |
T |
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| Q |
501 |
tttgagttg |
509 |
Q |
| |
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||||||||| |
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| T |
5084544 |
tttgagttg |
5084552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 5094016 - 5093921
Alignment:
| Q |
8 |
agaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
5094016 |
agaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggttattgaggatttgaatgcaagaagtgaaaattcatcggt |
5093921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 5111024 - 5110921
Alignment:
| Q |
3 |
gagagagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcgg |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |
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| T |
5111024 |
gagaaagaagaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctg |
5110925 |
T |
|
| Q |
103 |
tggt |
106 |
Q |
| |
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|||| |
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| T |
5110924 |
tggt |
5110921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 5110907 - 5110858
Alignment:
| Q |
126 |
atcaaagctaagcaagtgaagaagtaatagtagagtgatacagagagaat |
175 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||||| |||||||||| |
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| T |
5110907 |
atcatagctaagcaagtgaagaggtaataatagagtgaggcagagagaat |
5110858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 14427829 - 14427934
Alignment:
| Q |
3 |
gagagagaagaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcgg |
102 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14427829 |
gagaaagaagaagcagaagtggaaattgaccaattactaagaatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatcgg |
14427928 |
T |
|
| Q |
103 |
tggtta |
108 |
Q |
| |
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|||||| |
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| T |
14427929 |
tggtta |
14427934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 16872463 - 16872319
Alignment:
| Q |
10 |
aagaagtagaagaggaaattgaccaatta---ctaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtggt |
106 |
Q |
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|||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
16872463 |
aagaagtagaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattcatctatggt |
16872364 |
T |
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| Q |
107 |
tatgnnnnnnnnagtactcatcaaagctaagcaagtgaagaagtaata |
154 |
Q |
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||| ||||||||| |||||||||||||||||||||||| |
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| T |
16872363 |
gatgtttttgttagtactcat---agctaagcaagtgaagaagtaata |
16872319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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