View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12019_low_6 (Length: 441)

Name: NF12019_low_6
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12019_low_6
NF12019_low_6
[»] chr5 (4 HSPs)
chr5 (217-441)||(39675407-39675649)
chr5 (104-194)||(39675263-39675353)
chr5 (216-269)||(10865768-10865823)
chr5 (54-86)||(39675213-39675245)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 217 - 441
Target Start/End: Original strand, 39675407 - 39675649
Alignment:
Q  217 agtcaagtaaaggcttcttgtgatgatgtg--atgttagcatctccacaaaatatattatcttgacattactacaatattccctcgttgtgcacgagtta 314  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39675407 agtcaagtaaaggcttcttgtgatgatgtgtgatgttagcatctccacaaaatatattatcttgacattactacaatattccctcgttgttcacgagtta 39675506  T
Q  315 attacgatgtaactatgaaacttc----------------ctcactctcttattctttgtctgtctataaataacattctaaatcttggctttctttttc 398  Q
    |||||||| |||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675507 attacgatctaactatgaaacttcctcactctcactctcactcactctcttattctttgtctgtctataaataacattctaaatcttggctttctttttc 39675606  T
Q  399 aagtttcaaacaaattaccaatcaatctccctgaactcctttc 441  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  39675607 aagtttcaaaccaattaccaatcaatctccctgaactcctttc 39675649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 39675263 - 39675353
Alignment:
Q  104 ttacgttcaacgaattatttaaaactttgtttctttcaaatttgnnnnnnnaataacactagttttttaaaacttaattagtctgtgcaca 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  39675263 ttacgttcaatgaattatttaaaactttgtttctttcaaatttgttttttttataacactagttttttaaaacttaattagtctgtgcaca 39675353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 10865768 - 10865823
Alignment:
Q  216 tagtcaagtaaaggcttcttgtgatgatgtgatgttagca--tctccacaaaatat 269  Q
    ||||||| ||||||||||| |||||||||| |||||||||  ||||||||||||||    
T  10865768 tagtcaaataaaggcttctagtgatgatgtaatgttagcatctctccacaaaatat 10865823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 39675213 - 39675245
Alignment:
Q  54 ctccatcatttaaaacgttagtcgctaagtttg 86  Q
    |||||||||||||||||||||||||||| ||||    
T  39675213 ctccatcatttaaaacgttagtcgctaattttg 39675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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