View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_7 (Length: 437)
Name: NF12019_low_7
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 42143544 - 42143126
Alignment:
| Q |
1 |
tcaatgtttcttcaactgtaagttgtgggaaaagcacatcctcttgtgttacaaatccaatcctataggtagcataaaagagagagacattaaagtacat |
100 |
Q |
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| T |
42143544 |
tcaatgtttcttcaactgtaagttgtgggaaaagcacatcctcttgtgttacaaatccaatcctataggtagcataaaagagagatacattaaagtacat |
42143445 |
T |
|
| Q |
101 |
tgttagcacatattcatacattgaatcatagatgctgatgttctaacaagatgtttaaccttcttttaagagccgtactatatggaacatcattgtaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
42143444 |
tgttagcacatattcatacattgaatcatagatgctgatgttctaacacgatgtttaaccttcttttaagagcaggactatatggaacatcattgtaaga |
42143345 |
T |
|
| Q |
201 |
tatctttccctttacattatcaagtaatcttcctcctacaactcttaacaaggttgtctttccactaccagaaggacccatcaaagcaagaatttcgccg |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143344 |
tatctttccctttacatcatcaagtaatcttcctcctacaactcttaacaaggtcgtctttccactaccagaaggacccatcaaagcaagaatttcgccg |
42143245 |
T |
|
| Q |
301 |
gggccaatgcttcctgtgataccctttaaaattgtcttgtatttgttattttcttctacatggtgttgtgttgctacctttgacatcattgtctttacag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143244 |
gggccaatgcttcctgtgataccctttaaaattgtcttgtatttgttattttcttctacatggtgttgtgttgctacctttgacatcattgtctttacag |
42143145 |
T |
|
| Q |
401 |
ggtttttggaagctgtttg |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
42143144 |
ggtttttggaagctgtttg |
42143126 |
T |
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