View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_9 (Length: 426)
Name: NF12019_low_9
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_9 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 58 - 411
Target Start/End: Original strand, 147439 - 147792
Alignment:
| Q |
58 |
catcataagagtgatgatatattaaaaacgaaagagtctttaagacttaaaaggtatttgaatccaattataatagaaaaacaatacaagatcgnnnnnn |
157 |
Q |
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| T |
147439 |
catcataagagtgatgatatattaaaaacgaaagagtctttaagacttaaaaggtatttgaatccaattataatagaaaaacaatacaagatcgaaaaaa |
147538 |
T |
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| Q |
158 |
ncaacttatagatcttatacaaacattctagagggttattnnnnnnncactaaccttacactcactatggaactactttcaagactgacctgaatatcct |
257 |
Q |
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| T |
147539 |
acaacttatatatcttatacaaacattctagagggttattaaaaaaacactaaccttacactcactatggaactactttcaagactgaccttaatatcct |
147638 |
T |
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| Q |
258 |
caacaatggcgtaagagcatcacatacaaaccacctaagaatttcatatacaaatcggacaaagtaaattcaaatatcgcaagaaatgttgttcagtctc |
357 |
Q |
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| T |
147639 |
caacaatggcgtaagagcatcacatacaaaccacctaagaatttcatatacaaatcggacaaagtaaattcaaatatcgcaagaaatgttgttcagtctc |
147738 |
T |
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| Q |
358 |
ctgagtagtagaaggtagtacacacactttgaatcatccacatcccaaataatt |
411 |
Q |
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| T |
147739 |
ctgagtagtagaaggtagtacacacactttgaatcatccacatcccaaataatt |
147792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 147382 - 147417
Alignment:
| Q |
1 |
atgataccgtgaatctaaacctatctaaacacaccc |
36 |
Q |
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| T |
147382 |
atgataccgtgaatctaaatctatctaaacacaccc |
147417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 409
Target Start/End: Original strand, 33903565 - 33903747
Alignment:
| Q |
223 |
tatggaactactttcaagactgacctgaatatcctcaacaatggcgtaagagcatcacatacaaaccacctaagaatttcatatacaaatcggacaaagt |
322 |
Q |
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|||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| |||||||||||| | ||||||||| | || | ||||||| |
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| T |
33903565 |
tatggaactactttcaagactgacttttatatcgtcaacaatggcgtat---catcacatccaaaccacctaaaattttcatatagagattg-acaaagt |
33903660 |
T |
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| Q |
323 |
aaattcaaatatcgcaagaaatgttgttcagtctcctgagtagtagaaggtagtacacacactttgaatcatccacatcccaaataa |
409 |
Q |
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|||| ||||||| |||| |||||| ||||| ||| |||||||| ||| ||||||||||||||||||||||| ||||||| |||||| |
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| T |
33903661 |
aaatccaaatattgcaaaaaatgtagttcaaactcttgagtagtcgaacgtagtacacacactttgaatcattcacatcctaaataa |
33903747 |
T |
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