View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12020_high_2 (Length: 614)
Name: NF12020_high_2
Description: NF12020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12020_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 351 - 602
Target Start/End: Original strand, 43226565 - 43226816
Alignment:
| Q |
351 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||| |
|
|
| T |
43226565 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaa |
43226664 |
T |
|
| Q |
451 |
accacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226665 |
accacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgg |
43226764 |
T |
|
| Q |
551 |
gatgtgtgataaaactaaaattcagccacctcatcacctccgtccacacctt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226765 |
gatgtgtgataaaactaaaattcagccacctcatcacctccgtccacacctt |
43226816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 43226208 - 43226374
Alignment:
| Q |
79 |
atattcctttggttttgaccaaaaacataacaactctcgaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatgg |
178 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226208 |
atattcctttggttttgaccaaaaatataacaactctcaaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatgg |
43226307 |
T |
|
| Q |
179 |
cactcatagttttcttaatacttattctaaagaacagtgtttcctgagagaataacagctctgcgcaaaacagaggaaaa |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226308 |
cactcatagttttctt-------------aagaacagtgttttatgagagaataacagctctgcgcaaaacagaggaaaa |
43226374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 43242008 - 43242116
Alignment:
| Q |
111 |
actctcgaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatggcactcatagttttcttaatacttattctaaag |
210 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
43242008 |
actctcaaattacctcttttgatgcagaagaagctatcccgcttattcaaaacaaagaccggacatgacatccataattttcttattacttattctaaag |
43242107 |
T |
|
| Q |
211 |
aacagtgtt |
219 |
Q |
| |
|
|||| |||| |
|
|
| T |
43242108 |
aacaatgtt |
43242116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 43226065 - 43226124
Alignment:
| Q |
21 |
ctagtacaagtgtttcgtatctaaatcaaattatgaaaccactaatttaaaggtaaggat |
80 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43226065 |
ctagtaaaagtgtttcgtatctaaatcaaattatgaaagcactaaattaaaggtaaggat |
43226124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 43226458 - 43226505
Alignment:
| Q |
316 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226458 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
43226505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 449 - 528
Target Start/End: Complemental strand, 15623223 - 15623144
Alignment:
| Q |
449 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
528 |
Q |
| |
|
|||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
15623223 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15623144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 449 - 528
Target Start/End: Complemental strand, 15647012 - 15646933
Alignment:
| Q |
449 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
528 |
Q |
| |
|
|||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
15647012 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15646933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 16256842 - 16256768
Alignment:
| Q |
373 |
atcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttc |
447 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| || || | ||| |||| | |||||||||||||||| |
|
|
| T |
16256842 |
atcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaaaaaccctatcatttctcatcttc |
16256768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 602
Target Start/End: Complemental strand, 655248 - 655115
Alignment:
| Q |
469 |
tgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaa |
568 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| || |||| ||||| || ||||||| || ||||||| ||| || ||| | ||||||||| ||| |
|
|
| T |
655248 |
tgccaaattaaccacgccccgcgcctaagcttctttgaccaaacctccctagcccaacaaataacatgaatgaacgggtttggaggggtgataaaattaa |
655149 |
T |
|
| Q |
569 |
aattcagccacctcatcacctccgtccacacctt |
602 |
Q |
| |
|
|||||| |||| |||| |||| | |||||||||| |
|
|
| T |
655148 |
aattcaaccacttcattaccttcctccacacctt |
655115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University