View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12020_low_1 (Length: 666)
Name: NF12020_low_1
Description: NF12020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12020_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 257 - 644
Target Start/End: Complemental strand, 962781 - 962395
Alignment:
| Q |
257 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctgcatataggatcacccaataggtcagtaac |
356 |
Q |
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| T |
962781 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctacatataggatcacccaataggtcagtaac |
962682 |
T |
|
| Q |
357 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatctctatcact |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
962681 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatcactatcact |
962582 |
T |
|
| Q |
457 |
gcctcttcaaccttctttgatgatggtttttaccaattttcggctgctatcttcaaagacattgtgtataatataaatctttagaatagtagttagcaaa |
556 |
Q |
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| T |
962581 |
gcctcttcaaccttctttgatgatggtttttgccaattttcagctgctatcttcaaagacattgtgtataatataaatctttagaatggtagttagcaaa |
962482 |
T |
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| Q |
557 |
agataaaaaagattaataatgtgtttaatatttatgatatatggatttgttcttgatggtagtgattagcttctatgaactttcaatg |
644 |
Q |
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| T |
962481 |
agataaaaaagattaataatgtgtttaatatttatgatat-tggatttgttcttgatggtagtgattagcttctatgaactttcaatg |
962395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 963021 - 962816
Alignment:
| Q |
16 |
acatcaatatagtgtgtcaactcttagtctacacatttatatgttaatataatcnnnnnnnngttatatgattcaacttcaagataatgtgtcaacgaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |
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| T |
963021 |
acatcaatatagtgtgtcaactcttagtctacacatttatatgttaatataatcttttttt-gttatatgattcaacttcaagataatgtgtctatgaga |
962923 |
T |
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| Q |
116 |
tattagctcgcagtaagnnnnnnnnttcaaatatcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgat |
215 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
962922 |
tattagctcgcagtaagaaaaaaaattcaaatctcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgat |
962823 |
T |
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| Q |
216 |
caacttt |
222 |
Q |
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||||||| |
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| T |
962822 |
caacttt |
962816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 48727580 - 48727624
Alignment:
| Q |
161 |
gttgtaaaatagtcattactgtcactttattttataataatttct |
205 |
Q |
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| T |
48727580 |
gttgtaaaatagtcattaatgtcactttagttcataataatttct |
48727624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 33998763 - 33998717
Alignment:
| Q |
160 |
agttgtaaaatagtcattactgtcactttattttataataatttctc |
206 |
Q |
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| T |
33998763 |
agttgtaaaatagtcattaatgtcactttaattaatagtaatttctc |
33998717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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