View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12020_low_3 (Length: 590)
Name: NF12020_low_3
Description: NF12020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12020_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 4633029 - 4632472
Alignment:
| Q |
18 |
aaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcagaacatatatgacatagagaagttgattgg |
117 |
Q |
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| T |
4633029 |
aaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcggaacatatatgacatagagaagttgattgg |
4632930 |
T |
|
| Q |
118 |
ctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaag |
217 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632929 |
ctgaaatatcttccacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaag |
4632830 |
T |
|
| Q |
218 |
tttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagccttaaagagattcaacttgatgcatttgtaacatgttatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632829 |
tttccttattatttgataatggatttgagaacctgcctgagcctttttgactcttatagccttaaagagattcaacttgatgcatttgtaacatgttatt |
4632730 |
T |
|
| Q |
318 |
tatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaaataaagatgcattatatattttc |
417 |
Q |
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| T |
4632729 |
tatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaagtaaagatgcattatatattttc |
4632630 |
T |
|
| Q |
418 |
tgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtg |
517 |
Q |
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| T |
4632629 |
tgcaatatgcagagaaatcagtggatttaactttgatcttactc--atacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtg |
4632532 |
T |
|
| Q |
518 |
gattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctc |
577 |
Q |
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| T |
4632531 |
gattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctc |
4632472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 192 - 520
Target Start/End: Complemental strand, 27590971 - 27590643
Alignment:
| Q |
192 |
tagtgatgacgacaaatgtgatcaagtttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagcct-taaagagattc |
290 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
27590971 |
tagtggtgacgacaaatgtgatcaaggctccttattatttgataatggatttgagaacctgcctgagccttttggactcttatagcctctaaagagattc |
27590872 |
T |
|
| Q |
291 |
aacttgatgcatttgtaacatgttatttatgttataattcttatctcattttt-gtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaa |
389 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||| |||| |
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| T |
27590871 |
aacttgatgcatttgtaacatgttatttatgttgtaattcttatctcattttttgtgtgaaaggatgagatatttcaactcataaagctccaaatggcaa |
27590772 |
T |
|
| Q |
390 |
agaaaataaagatgcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaatta |
489 |
Q |
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||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
27590771 |
agaaagtaaagacgcattgtatgttttctgcaatatgcagagaaatcagtggattt--ctttgatcttactcatatacaaataatgctcgaaaaaaatta |
27590674 |
T |
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| Q |
490 |
caagaaacaggttcaactttcttgagtggat |
520 |
Q |
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|| |||||| || |||||||||||||||||| |
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| T |
27590673 |
catgaaacatgtccaactttcttgagtggat |
27590643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 10168994 - 10169076
Alignment:
| Q |
91 |
catatatgacatagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtat |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
10168994 |
catatatgacatagagaagttgattggctgcaatatcttctaattttccttatttgtttttttgaataatatttttgttgtat |
10169076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 12534275 - 12534323
Alignment:
| Q |
19 |
aatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaa |
67 |
Q |
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||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
12534275 |
aatagatgcatcaaattgctaggcaaatttagagtcaaataattaagaa |
12534323 |
T |
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