View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12020_low_6 (Length: 239)

Name: NF12020_low_6
Description: NF12020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12020_low_6
NF12020_low_6
[»] chr3 (5 HSPs)
chr3 (8-231)||(4293920-4294141)
chr3 (29-91)||(35850809-35850871)
chr3 (29-91)||(44991091-44991153)
chr3 (29-91)||(45279414-45279476)
chr3 (29-91)||(48433960-48434022)
[»] chr5 (4 HSPs)
chr5 (29-91)||(14274360-14274423)
chr5 (29-91)||(42854832-42854894)
chr5 (29-79)||(42858485-42858535)
chr5 (30-91)||(26065764-26065825)
[»] chr4 (5 HSPs)
chr4 (29-80)||(50977609-50977660)
chr4 (29-75)||(8579087-8579133)
chr4 (29-75)||(8593943-8593989)
chr4 (29-80)||(563651-563702)
chr4 (29-91)||(22335558-22335620)
[»] chr8 (2 HSPs)
chr8 (29-91)||(38464765-38464827)
chr8 (29-114)||(15237993-15238078)
[»] chr7 (4 HSPs)
chr7 (29-91)||(4029525-4029587)
chr7 (29-78)||(10360544-10360592)
chr7 (48-91)||(30154666-30154709)
chr7 (29-91)||(8869729-8869791)
[»] chr6 (1 HSPs)
chr6 (29-81)||(20491650-20491702)
[»] chr2 (3 HSPs)
chr2 (29-93)||(31769943-31770007)
chr2 (47-91)||(37084769-37084813)
chr2 (33-77)||(41910979-41911023)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 4294141 - 4293920
Alignment:
Q  8 aaaactcataagcaactaatgaaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaagtatcgtaaaagaggg 107  Q
    |||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4294141 aaaactcataagcaactaattaaactcataaatggaagcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaagtatcgtaaaagagga 4294042  T
Q  108 taggatactattttgctaatttataacataaagagtttaatcgaacacaattgcgttggcctgatgtggtatttggtctcggagtgtgttcatcctcaat 207  Q
    ||||||||| |||||  | |||||||||||||||||| |||||||||||||||||||||||| |  ||||||||| |||||||||||| ||||||||||     
T  4294041 taggatactcttttgacattttataacataaagagttgaatcgaacacaattgcgttggcctaa--tggtatttgatctcggagtgtgctcatcctcaag 4293944  T
Q  208 gacttagattcgattctctctgct 231  Q
    || ||||||||||||||| |||||    
T  4293943 gatttagattcgattctccctgct 4293920  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 35850809 - 35850871
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| ||  ||||||||||||||||||||||| ||| | | ||||| ||||||||    
T  35850809 aaactcataaacaaattcaaatcttcatcatacaaacctagaaaattagattttattgaaaaa 35850871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 44991153 - 44991091
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| ||| | |||||||||||||||||| || ||||||| ||||  ||||||||    
T  44991153 aaactcataaacaaactcgaatcttcatcatacaaacatagaaactcaaatttcattgaaaaa 44991091  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 45279414 - 45279476
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| ||  |||||||||||||||||||||| |||| ||| ||| | ||||||||    
T  45279414 aaactcataaacaaattcaaatcttcatcatacaaacctgaaaaatcagattatattgaaaaa 45279476  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 48433960 - 48434022
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||  | ||||||||||||||||||||||||||| ||| ||| ||||  ||||||||    
T  48433960 aaactcataggcaaacgcaaatcttcatcatacaaacctagaaaatcaaatttctttgaaaaa 48434022  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 14274423 - 14274360
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacc-taaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||| |||||||||    
T  14274423 aaactcataaacaaactcaaatcttcatcatacaaaccttaaaaactcaaatttcgttgaaaaa 14274360  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 42854894 - 42854832
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| |||  |||||||||||||||||||||| ||||||||||||  ||||||||    
T  42854894 aaactcataaacaaacttaaatcttcatcatacaaacctataaactcatatttcattgaaaaa 42854832  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 42858485 - 42858535
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatat 79  Q
    |||||||||| | ||  ||||||||||| ||||||||||||||||||||||    
T  42858485 aaactcataagcaaattcaaatcttcataatacaaacctaaaaactcatat 42858535  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 26065764 - 26065825
Alignment:
Q  30 aactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    ||||||||||| ||| |||||||||||||||||| | ||||||  |||||||  ||||||||    
T  26065764 aactcataaacaaactcaaatcttcatcatacaagcataaaaatacatatttcattgaaaaa 26065825  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 50977609 - 50977660
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatatt 80  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  50977609 aaactcataaacaaactcaaatcttcatcatacaaacctaaaaaatcatatt 50977660  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8579133 - 8579087
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactc 75  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||    
T  8579133 aaactcataaacaaactcaaatcttcatcatacaaacttaaaaactc 8579087  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8593989 - 8593943
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactc 75  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||    
T  8593989 aaactcataaacaaactcaaatcttcatcatacaaacttaaaaactc 8593943  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 563651 - 563702
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatatt 80  Q
    |||||||||||| ||| ||||| || |||||||||||||||||| |||||||    
T  563651 aaactcataaacaaactcaaatatttatcatacaaacctaaaaaatcatatt 563702  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 22335620 - 22335558
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    ||||||| |||| ||| ||||||||||||||||||||||| ||| ||| ||||  ||||||||    
T  22335620 aaactcacaaacaaacccaaatcttcatcatacaaacctagaaaatcagatttcattgaaaaa 22335558  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 38464827 - 38464765
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  38464827 aaactcataaaaaaacccaaatcttcatcatacacacctaaaaaatcatattttattgaaaaa 38464765  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 15238078 - 15237993
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaagtatcgtaaaagagggtaggata 114  Q
    |||||||||||| ||  ||||||||||||||| ||||||||||| |   |||| ||||||||||| || ||||| | |||||||||    
T  15238078 aaactcataaacaaatccaaatcttcatcataaaaacctaaaaatttggatttcgttgaaaaagtctcataaaaaatggtaggata 15237993  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 4029525 - 4029587
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    ||||||||||||  |  |||||||||||||||||||| |||||||||| |||| |||||||||    
T  4029525 aaactcataaacatattcaaatcttcatcatacaaacttaaaaactcacatttcgttgaaaaa 4029587  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 10360592 - 10360544
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcata 78  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  10360592 aaactcataaacaaac-caaatcttcatcatacaaacataaaaactcata 10360544  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 30154709 - 30154666
Alignment:
Q  48 aatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||| |||||||||||||||||||||||  ||||||||    
T  30154709 aatcttcatcgtacaaacctaaaaactcatatttcattgaaaaa 30154666  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 8869729 - 8869791
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||  ||||||||    
T  8869729 aaactcataaacaaacccaaatcttcatcatacaaatcaagaaactcaaatttcattgaaaaa 8869791  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 20491650 - 20491702
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattt 81  Q
    |||||||||||| ||| ||||| ||||||||||||||| | || |||||||||    
T  20491650 aaactcataaacaaacccaaattttcatcatacaaaccaagaacctcatattt 20491702  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 31769943 - 31770007
Alignment:
Q  29 aaactcataaacgaacgcaaatcttcatcatacaaacctaaaaactcatattttgttgaaaaagt 93  Q
    |||||||||||| ||| ||||||||||||||||||  | | ||||||| ||||  ||||||||||    
T  31769943 aaactcataaacaaacccaaatcttcatcatacaagtcaagaaactcaaatttcattgaaaaagt 31770007  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37084813 - 37084769
Alignment:
Q  47 aaatcttcatcatacaaacctaaaaactcatattttgttgaaaaa 91  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||    
T  37084813 aaatcttcatcatacaaacctaaaaaatcagatttcattgaaaaa 37084769  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 41911023 - 41910979
Alignment:
Q  33 tcataaacgaacgcaaatcttcatcatacaaacctaaaaactcat 77  Q
    |||||||| ||  ||||||||||||||||||| ||||||||||||    
T  41911023 tcataaacaaattcaaatcttcatcatacaaatctaaaaactcat 41910979  T

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