View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12020_low_7 (Length: 236)
Name: NF12020_low_7
Description: NF12020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12020_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 4294445 - 4294254
Alignment:
| Q |
14 |
aatcaaactctacaaaatgcttaattttcctttaacnnnnnnnntcttcattttattattatttatttctttactgcttgacttagcgtctccaccccga |
113 |
Q |
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| T |
4294445 |
aatcaaactctacaaaatgcttaattttcctttaa---aaaaaatcatcattttattattattcttttgtgtactgcttgacttagcctttccaccccga |
4294349 |
T |
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| Q |
114 |
aaagagaaaatctataacaatacaaagttattgaaaatatataattcttataattttcaataataccaggtggtaggggacttgaactccttagg |
208 |
Q |
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| T |
4294348 |
aaagagaaaatctataacaatataaagttattgaaaatatataattcttatatttttcaataacaccaggtggtaagggacttgaactccttagg |
4294254 |
T |
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