View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_high_11 (Length: 481)
Name: NF12021_high_11
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 41921300 - 41920844
Alignment:
| Q |
17 |
acattccaacgccaagttctaacaagtgaatcctatttgatatttgagaacaaagataacaaatgtaggtaagtagaagtaccatataacatttactatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921300 |
acattccaacgccaagttctaacaagtgaatcctatttgatatttgagaacaaagataacaaatgtaggtaagtagaagtaccatataacatttactatt |
41921201 |
T |
|
| Q |
117 |
tagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921200 |
tagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaatttact |
41921101 |
T |
|
| Q |
217 |
attggtcgcatcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctaccaaataactaaga |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41921100 |
attggtcgcatcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctatcaaataactaaga |
41921001 |
T |
|
| Q |
317 |
caatagtactgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtg |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921000 |
caatagtactaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtg |
41920901 |
T |
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| Q |
417 |
acaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgct |
473 |
Q |
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| T |
41920900 |
acaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgct |
41920844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 329 - 471
Target Start/End: Original strand, 26829762 - 26829904
Alignment:
| Q |
329 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
428 |
Q |
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||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
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| Q |
429 |
ttcactcgactagcctccagtagaccaataacagttgcctttg |
471 |
Q |
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| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttg |
26829904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 459
Target Start/End: Original strand, 26789245 - 26789376
Alignment:
| Q |
328 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
427 |
Q |
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|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
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| Q |
428 |
attcactcgactagcctccagtagaccaataa |
459 |
Q |
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| T |
26789345 |
attcactctactagtctctagcagaccaataa |
26789376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 26816137 - 26816206
Alignment:
| Q |
390 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataa |
459 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataa |
26816206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 26782932 - 26783017
Alignment:
| Q |
388 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgct |
473 |
Q |
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| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgct |
26783017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
388 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
434 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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