View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_high_2 (Length: 952)
Name: NF12021_high_2
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 406 - 936
Target Start/End: Complemental strand, 28382800 - 28382272
Alignment:
| Q |
406 |
gatataatttaaagtctttaattggtgcccttgagacatagttaacatttttcttatcttaaatagatcttagttaacatacacaattgcgcgcgtagat |
505 |
Q |
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| T |
28382800 |
gatataatttaaagtctttaactggtgccctagagacatagttaacatttttcatatcttaaatagatcttagttaacatacacaattgcgcgcgtagat |
28382701 |
T |
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| Q |
506 |
atatttgatttatcgaaaaatgttgatattacatcaaatattgaatttaattttaaaacaaaaaattgcatggggtaattattattaatatcagtgacat |
605 |
Q |
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| T |
28382700 |
atatttgatttatcgaaaaatgttgatattacatcaaatattgaatttaattttaaaataaaaaattgcatggggtaattattattaatatcagtgacat |
28382601 |
T |
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| Q |
606 |
taataatcaatattannnnnnngacaaaaattaataatcaatattttataatttgaaggactataacattggaccgacccttcttgaacaacttgaattt |
705 |
Q |
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| T |
28382600 |
taataatcaatattatttttttgacaaaaattaataatcaatattttataatttgaaggacta--acattggaccgacccttcttgaacaacttgaattt |
28382503 |
T |
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| Q |
706 |
aatttatataaatagttattgtaaaaagagttttccacataattatatgagcatgacaaattatatgttcttaactcattaaataatgtataataattca |
805 |
Q |
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| T |
28382502 |
aatttatataaatagttattgtaaaaagagttttccacataattatatgagcatgaaaaattatatgtttttaactcattaaataatgtataataattca |
28382403 |
T |
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| Q |
806 |
cgtaaaacttttttacatgaaatagttttaaactcataaatttcactatgcaattcttttgttgttagggatcataaatataggaacataccctctatca |
905 |
Q |
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| T |
28382402 |
cgtaaaacatttttacatgaaatagttttaaactcataaatttcactatgcaattcttttgttgtaagggatcataaatataggaacataccctctatca |
28382303 |
T |
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| Q |
906 |
tcttcatcgttttcagattcaagaatgttgt |
936 |
Q |
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| T |
28382302 |
tcttcatcgttttcagattcaagaatgttgt |
28382272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 28383192 - 28382892
Alignment:
| Q |
16 |
catcagctgctataaccgaaaagtttgttccttcgattctgcaacattgtcgtatagttatacaaatatcactactctagaaataattgaaaccaacaat |
115 |
Q |
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| T |
28383192 |
catcagctgctataaccgaaaagtttgttccttcgattctgcaacattgccgtatagttatacaaatatcactactctaaaaataattgaaaccaacaat |
28383093 |
T |
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| Q |
116 |
ttgttttgattgagaagacaaaaaatattggagatttatttttatggcaatataaataaatctaaaaagttataccttatttttgaaggaaaagagttat |
215 |
Q |
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| T |
28383092 |
ttgttttgattgagaagacaaaaaatattggagatttatttttatggcaatataaataaatctaaaaagttataccttatttttgaaggaaaagagttat |
28382993 |
T |
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| Q |
216 |
acctttggaaggtgctaggctttcctacttcattccaaacaacgtcgaagtacctgaaaatgagattaaacattaaagaacacgttatattcgagacatt |
315 |
Q |
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| T |
28382992 |
acctttggaaggtgctaggctttcctacttcattccaaacaacgtcgaagtacctgaaaatgagattaaacattaaaaaacacgttatattcgagacatt |
28382893 |
T |
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| Q |
316 |
c |
316 |
Q |
| |
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| T |
28382892 |
c |
28382892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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