View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_high_8 (Length: 605)
Name: NF12021_high_8
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 213 - 588
Target Start/End: Original strand, 47820920 - 47821296
Alignment:
| Q |
213 |
caaacaagtcttaagtgtgagaaaataatgaattaagcaccacatttatctttcaatnnnnnnnnnnn-gtactaaatttatctttttcttttcaatgta |
311 |
Q |
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| T |
47820920 |
caaacaagtcgtaagtgtgagaaaataatgagttaagcaccacatttatctttcaacaaaaaaacaaaagtactaaatttatctttttcttttcaatgta |
47821019 |
T |
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| Q |
312 |
ttattcgatggcatacttgacaaatctctaaaaacttgttctcggcctaaaaaatttctgataaatattagtttttattaacgtccctactaaaggagga |
411 |
Q |
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| T |
47821020 |
ttattcgatggcatacttgacaaatctctaaaaacttgttctcggcctaaaaaaattctgataaatagtagtttttattaacgtccctactaaaggagga |
47821119 |
T |
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| Q |
412 |
aaggaataaatcttttgaagcccttagaaaaatggaagatttaaagctcaagttatcatgagcaagaaagcaaattaatctcattatagtcagcttttcc |
511 |
Q |
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| T |
47821120 |
aaggaataaatcttttgaagcccttggaaaaatggaagatttaaagctcaagttatcatgagcaagaaagcaaattaatctcattatagtcagcttttcc |
47821219 |
T |
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| Q |
512 |
ttttttgtaagcttttcatttggaagagatggaaagagcttttcttgaaaattctcacaagtttggtatttcaatgc |
588 |
Q |
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| T |
47821220 |
ttttttgtaagcttttcatttggaagagatggaaagagcttttcttgaaaattctcacaagtttggtatttcaatgc |
47821296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 47820704 - 47820863
Alignment:
| Q |
1 |
aaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaagtgtgggtccc |
100 |
Q |
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| T |
47820704 |
aaatggaaaacaaaaggataaaaatgcaaaagtagtgatatattttatctctctcgtgtttcttcgttagtttgtggagatgcaaaaaggtgtgggtctc |
47820803 |
T |
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| Q |
101 |
agcccattttaatatgtagtctcactttctctgatgttccaaactaaagaaagaaagcat |
160 |
Q |
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| T |
47820804 |
agcccattttaatccgtcgtctcactttctctgatgttccaaactgaagaaagaaagcat |
47820863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 41318930 - 41319089
Alignment:
| Q |
1 |
aaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaagtgtgggtccc |
100 |
Q |
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| T |
41318930 |
aaatggaaaacaaaaggataaaaatggaaaagtagtgatatttttcttctctctcgtgtttcttcgctagttagaggagatgcaaaaaggtgtgggtccc |
41319029 |
T |
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| Q |
101 |
agcccattttaatatgtagtctcactttctctgatgttccaaactaaagaaagaaagcat |
160 |
Q |
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| T |
41319030 |
agcccatttttatctgtcgtctcactttctctgatgcaccagactgaagaaagaatgcat |
41319089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42561315 - 42561206
Alignment:
| Q |
1 |
aaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaa-gtgtgggtcc |
99 |
Q |
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|||| |||||||||||| ||||||| ||||||||||||||| || |||||||||||||||| ||| |||| |||||||||||||| |||||||||| |
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| T |
42561315 |
aaattgaaaacaaaaggctaaaaattgaaaagtagtgatattatttatctctctcgtgtttctctgctgttttgaggagatgcaaaaaaggtgtgggtcc |
42561216 |
T |
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| Q |
100 |
cagcccattt |
109 |
Q |
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| T |
42561215 |
cagccaattt |
42561206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18604413 - 18604523
Alignment:
| Q |
1 |
aaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaa--gtgtgggtc |
98 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||| || ||||||| ||||||| ||| |||| |||||||||||||| ||||||||| |
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| T |
18604413 |
aaattgaaaacaaaaggctaaaaatggaaaagtagtgatattatttatctctcttatgtttctatgctgttttgaggagatgcaaaaaaaggtgtgggtc |
18604512 |
T |
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| Q |
99 |
ccagcccattt |
109 |
Q |
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| T |
18604513 |
ccagccaattt |
18604523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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