View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_1 (Length: 1063)
Name: NF12021_low_1
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 42322187 - 42322734
Alignment:
| Q |
19 |
gatatagccgtgacatag-tttgtaatccaaacttgggtatcatgtaatacggagtgagagtgtgttcttcccccttgctacgactattgaaaatttagt |
117 |
Q |
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| T |
42322187 |
gatatagccgtgacatagatttgtaatccaaacttgggtatcacgtaatacggagtgagagtgtgttcttcccccttgctgcggctattgaaaatttagt |
42322286 |
T |
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| Q |
118 |
tacagttgacgtcaaagctatggagagattcaatggaaaatatgttcgggtttgagttgaactttatatgaatgaaactgtggttggacacacaaatttt |
217 |
Q |
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| T |
42322287 |
tacagttgacgtcaaagctatggagagatttaatagaaaatatgttcggatttgagttgaactttatatgaatgaaactgtggttggacaca--aatttt |
42322384 |
T |
|
| Q |
218 |
tgtgggatgtggttgaaagcacaatgtgagggcttgcatgtttgtgtaaaaattatagtacatgtggtca---------aaactgttttaagaagttgta |
308 |
Q |
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| T |
42322385 |
tgtgggatgtggttgaaagcacaatgtgagggcttgcatgtttgtgtaaaaattatagtacatgtggtcatgttgctcaaaattgttttaagaagttgta |
42322484 |
T |
|
| Q |
309 |
gaaatcaattgtgacgacgaagacaactaaggcgattcacaattatagttaagtcgaatgaaatcgtaattaaacaccagttggcaatattgttgatagg |
408 |
Q |
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| T |
42322485 |
gaaatcaattgtgacgacgaagacaactaaggcgattcacaattatagttaagtcgaatgagatcgtaattaaacactagttggcaatattgttgatagg |
42322584 |
T |
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| Q |
409 |
tattgtgaactcgaacaaattgtcataaatataaggatttaatagttgtttccaaaaacaaaaacatattgttacctaaatataagatttttgattttac |
508 |
Q |
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| T |
42322585 |
tattgtgaactcgaacaaattgtcataaatataaggatttaatagttgtttccaaaaacaaaaacatattgttacctaaatatgaaatttttgattttac |
42322684 |
T |
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| Q |
509 |
attaaaataaaagtcattcaaatatagaaacgaatatagtataatcaaat |
558 |
Q |
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| T |
42322685 |
ataaaaataaacgtcattcaaatatagaaacgaatatagtataatgaaat |
42322734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 733 - 1050
Target Start/End: Original strand, 42322840 - 42323139
Alignment:
| Q |
733 |
aagcgtaaggaaagtagaaaaaatcaacaaataaataagatcgcagtagagcgagcgacttacaaacaaagggaagtgacatgctcccacacacaagagg |
832 |
Q |
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| T |
42322840 |
aagcgtaaggaaagtagaaaaaatcaacaaataaataagattgcagtagagcga----cttacaa----agggaagtgacatgctcccacacacaagagg |
42322931 |
T |
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| Q |
833 |
caatcccattggctaaaaccgtcctgactcaattttcaattggtccacgtaatcaccaatgacatgttcgaaattaagactaaacactataaaaagcgca |
932 |
Q |
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| T |
42322932 |
caatcccattggctaaaaccgtcctgactcaattttcaattggtccacgtaatcaccaatgacatgttcgaaattaagactaaacactataaaaagcgca |
42323031 |
T |
|
| Q |
933 |
gaggaacactcgcatcatcattcataatcaacacatcttcatctttgaatcacaacaagacggtgcagaatacatctcacaacaccatggctcgctcttc |
1032 |
Q |
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| T |
42323032 |
gaggaacactcgcatc----------atcaacacatcttcatctttgaatcacaacaagacggtgcagtatacatctcacaacaccatggctcgctcttc |
42323121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 820 - 1043
Target Start/End: Complemental strand, 42321746 - 42321527
Alignment:
| Q |
820 |
cacacacaagaggcaatcccattggctaaaaccgtcctgactcaattttcaattggtccacgtaatcaccaatgacatgttcgaaattaag-------ac |
912 |
Q |
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| T |
42321746 |
cacacacaagaggca-tcccattggctaaaatcgtcctaactcgatttacaattggttcacgtaatcatcaatgacttgttcgaaattaagagtaaacag |
42321648 |
T |
|
| Q |
913 |
taaacactataaaaagcgcagaggaacactcgcatcatcattcataatcaacacatcttcatctttgaatcacaacaagacggtgcagaatacatctcac |
1012 |
Q |
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| T |
42321647 |
taaacactataaaatgcgcagagtaacactcgcatcatc-------gtcaatactactccatctttgaatc---acaagacggtgacgaatacatctcac |
42321558 |
T |
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| Q |
1013 |
aacaccatggctcgctcttcttcttgcgggt |
1043 |
Q |
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| T |
42321557 |
aacaccatggctcactcttcttcttgcgggt |
42321527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 42322019 - 42321915
Alignment:
| Q |
523 |
cattcaaatatagaaacgaatatagtataatcaaatgaccgtgaatttagacatttgccgaccataatttgaagccaataatataattagtaatttatgt |
622 |
Q |
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| T |
42322019 |
cattcaaatatagaaatgaaagtagtataatcaaatgaccgtgaatttagacatttgccaaccataatttgaagcc---aacataattactaatttatgt |
42321923 |
T |
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| Q |
623 |
attgcaac |
630 |
Q |
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|||||||| |
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| T |
42321922 |
attgcaac |
42321915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 630
Target Start/End: Original strand, 42322735 - 42322780
Alignment:
| Q |
584 |
ccataatttgaagccaataatataattagtaatttatgtattgcaac |
630 |
Q |
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| T |
42322735 |
ccataatttgaagccaata-tataattactaatttatgtattgcaac |
42322780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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