View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12021_low_10 (Length: 508)
Name: NF12021_low_10
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 163 - 483
Target Start/End: Complemental strand, 47291391 - 47291069
Alignment:
| Q |
163 |
acggtgcatctagtacatccgagaaccttacaatcttaaatggattaggattgtaggtcctttggtaacatatctcgttcactagagctgagcattgtat |
262 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47291391 |
acggtgcatctggtacatccgagaatcttacaatcttaaattgattaggattgtaggtcctttggtaacatatctcgttcactagagctgaacattgtat |
47291292 |
T |
|
| Q |
263 |
tata--atgtaaattcatttttaaagtttgcgtaaaaatgtaaaatgtgacatgtctaagcttcacttttgaaaataaagtttacgtgtttccattcatc |
360 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47291291 |
tatataatgtaaattcattttcaaagtttgcgtaaaaatgtaaaatgtgacatgtctaagcttcacttttgaaaataaaatttacgtgtttccattcatc |
47291192 |
T |
|
| Q |
361 |
atagattccgttgtgtatttattatactctaaaactgtagtatttcaaaatgaaattta-ggttgtaacaacaattttttcaatgctcggttgacttaca |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| |
|
|
| T |
47291191 |
atagattccgttgtgtatttattatactctaaaactgtagtatttcaaaatgaaatttatgattgtaacaacaa-ttgttcaatgctcggttgacttaca |
47291093 |
T |
|
| Q |
460 |
gaatctccaatcataaaaggcttc |
483 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47291092 |
aaatctccaatcataaaaggcttc |
47291069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 47300237 - 47300139
Alignment:
| Q |
246 |
agagctgagcattgtattataatgtaaattcatttttaaagtttgcgtaaaaatgtaaaatgtgacatgtctaagcttcacttttgaaaataaagttta |
344 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| ||||| |||||||| | ||||||||| |||||||| ||||||| |||| |||||||||||| |
|
|
| T |
47300237 |
agagctggacattgtatggtaatgtaaatttattttcaaagtccgcgtaaaagtttaaaatgtggcatgtctatgcttcacatttgtaaataaagttta |
47300139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 47291510 - 47291395
Alignment:
| Q |
12 |
gagatgaatatttaactattagactatttgacnnnnnnnnnn-gaatgaatacatgaacaatatattaa--atgtcataaggttcnnnnnnnttattaac |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
47291510 |
gagatgaatatctaactattagactatttgacaaaaaaagaaagaatgaatacatgaacaatatattaaatatgtcataaggttcaaaaaaattattaac |
47291411 |
T |
|
| Q |
109 |
agtgacactgatgatc |
124 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
47291410 |
aacgacactgatgatc |
47291395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 47289463 - 47289379
Alignment:
| Q |
260 |
tattataatgtaaattcatttttaaagtttgcgtaaaaatgtaaaatgtgacatgtctaagcttcacttttgaaaataaagttta |
344 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||| | ||||||||| ||||||| || ||||| ||||||||||||||||| |
|
|
| T |
47289463 |
tattgtaatgtaaacctatttttaaagtcagtctaaaagtttaaaatgtggcatgtctgagtttcacatttgaaaataaagttta |
47289379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University