View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_12 (Length: 462)
Name: NF12021_low_12
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 3933325 - 3933755
Alignment:
| Q |
12 |
atgaatcaccagcaactgttggaaaaatagtgcgaattgacatggatggtgccctcaatgtaagtacagttccataactactacgaaacaggacctaaat |
111 |
Q |
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| T |
3933325 |
atgaatcaccagcaactgttggaaaaatagtgcgaattgacatggatggtgccctcaatgtaagtacagttccataactactacgaaacaggacctaaat |
3933424 |
T |
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| Q |
112 |
agtaatagacccggattggtattaaatcttataaagccatataaatattgcctaggtaatagcatatatgtgggggaattttgccactttatatggctaa |
211 |
Q |
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| T |
3933425 |
agtaatagacccggattggtattaaatcttataaagctatataaatattgcctaggtaatagcatatatgtgggggaattttgccactttatatggctaa |
3933524 |
T |
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| Q |
212 |
aatcaaatttttgcaaatgctaattagtatttgatttcatcttgaggttacatcagacaatatgtgttttaaatgttttttgtttgtaggcgagggtcac |
311 |
Q |
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| T |
3933525 |
aatcaaagttttgcaaatgctaattagtatttgatttcatcttgaggttacatcagaca--atgtgttttaaatgttttttgtttgtaggcgagggtcac |
3933622 |
T |
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| Q |
312 |
tggtaggcagagcttgtggaaagtttctcctggagatgcagaacgacttccaggatttgaggttggagattgggtacgctctaaaccaagcctgggaaat |
411 |
Q |
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| T |
3933623 |
tggtaggcagagcttgtggaaagtttctcctggagatgcagaacgacttccaggatttgaggttggagattgggtacgctctaaaccaagcctgggaaat |
3933722 |
T |
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| Q |
412 |
agaccaagttatgactggaatagtgttgggaga |
444 |
Q |
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| T |
3933723 |
agaccaagttatgactggaatagtgttgggaga |
3933755 |
T |
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