View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_13 (Length: 458)
Name: NF12021_low_13
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 37649163 - 37649596
Alignment:
| Q |
18 |
ctacaatctcatgacgaagaataacatccaatgacctaggcagcgagccagcaggtatctcattggacgtctcctgcattctgaccctttgccaatcagt |
117 |
Q |
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| T |
37649163 |
ctacaatctcatgacgaagaataacatccaatgacctaggcagcgagccagcaggtatctcattggacgtctcctgcattctgaccctttgccaatcagt |
37649262 |
T |
|
| Q |
118 |
aaatttgctctcttggcgaagcagtgcccactttgctctgttgttacatgtagcattgggacaaattgttggctgcattagcacaaacagaacagtcata |
217 |
Q |
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| T |
37649263 |
aaatttgctctcttggcgaagcagtgcccactttgctctgttgttacatgtagcattgggacaaattgttggctgcattagcacaaacagaacagtcata |
37649362 |
T |
|
| Q |
218 |
taaaaatcaaaataagcaacaatataaaacacagtattattcataatttaatactacgagcaacnnnnnnntacaattttcaattaactacctcagtata |
317 |
Q |
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| T |
37649363 |
taaaaatcaaaataagcaacaatataaaacacagtattattcataatttaatactacgagcaacaaaaaaatacaattttcaattaactacctcagtata |
37649462 |
T |
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| Q |
318 |
cttgaattgctgttcaacattctttataaccccaccacattctagacacttgaaagttccttggagaagctcaggtcgaacctcacttgtccttgttacc |
417 |
Q |
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| T |
37649463 |
cttgaattgctgttcaacattctttataaccccaccacattctagacacttgaaagttccttggagaagctcaggtcgaacctcacttgtccttgttacc |
37649562 |
T |
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| Q |
418 |
actcctgttacagatacaagcctaccaatctctg |
451 |
Q |
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| T |
37649563 |
actcctgttacagatacaagcctaccaatctctg |
37649596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 307 - 451
Target Start/End: Original strand, 14762664 - 14762808
Alignment:
| Q |
307 |
acctcagtatacttgaattgctgttcaacattctttataaccccaccacattctagacacttgaaagttccttggagaagctcaggtcgaacctcacttg |
406 |
Q |
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||||||||||||||||| || ||||| ||||||||||| | ||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
14762664 |
acctcagtatacttgaactgttgttctacattctttatcatcccaccacattctaggcatttgaaggttccatggagaagctccggtcgaacctcacttg |
14762763 |
T |
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| Q |
407 |
tccttgttaccactcctgttacagatacaagcctaccaatctctg |
451 |
Q |
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| T |
14762764 |
tccttgttacaactcctgtcacagatacaagccttccaatctctg |
14762808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 14762375 - 14762507
Alignment:
| Q |
20 |
acaatctcatgacgaagaataacatccaatgacctaggcagcgagccagcaggtatctcattggacgtctcctgcattctgaccctttgccaatcagtaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
14762375 |
acaatctcatgacgaagaataacatccaatgaccttggcaatgagcctgcaggtatctctttggatgtctcctgcattctgaccttttgccagtcagtaa |
14762474 |
T |
|
| Q |
120 |
atttgctctcttggcgaagcagtgcccactttg |
152 |
Q |
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|||||||||||| || | ||||||||| |||| |
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| T |
14762475 |
atttgctctcttcacgcaacagtgcccaatttg |
14762507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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