View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_14 (Length: 421)
Name: NF12021_low_14
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_14 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 6622958 - 6623345
Alignment:
| Q |
20 |
caaaccgtattttcaagcttagaacttggttgcttgaaagcttctgaacctgaaatcataattttcagcacttgaatttcaatactgttgtcttctcttg |
119 |
Q |
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| T |
6622958 |
caaaccgtattttcaagcttagaacttggttgcttgaaagcttctgaacctgaaatcataattttcagcacttgaatatcaatactgttgtcttctcttg |
6623057 |
T |
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| Q |
120 |
gatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagtttataaaatcatattcctattgataatttccagttttcttcaagttttgata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
6623058 |
gatttcaatgctgttgaagttcttcattcagcaacgcacaacacgagtttataaaatcgtattcatattgataatttccagttttcttgaagttttgata |
6623157 |
T |
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| Q |
220 |
cataaattagtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623158 |
cataaattagtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttc |
6623257 |
T |
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| Q |
320 |
atgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgtt |
407 |
Q |
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| T |
6623258 |
atgaattcccctcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgtt |
6623345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 90628 - 90415
Alignment:
| Q |
48 |
gttgcttgaaagcttctgaacctgaaatcataattttcagcacttgaatttcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcatt |
147 |
Q |
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| T |
90628 |
gttgcttgatagcttgtgaacctgaaatcatcgttttcagcacttggatttcaatactgccgtcttctcttggatttcaatgctgttgatgttcttcatt |
90529 |
T |
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| Q |
148 |
cagcaacgcacaacacgagtttataaaatcatattcctattgataatttccagttttcttcaagttttgatacataaattagtaaatcttttgcagtggt |
247 |
Q |
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| T |
90528 |
cagcaatgcacaacacgagtttataaaatcatattccttcggatgatttccagtttt----aagttttgatacataaattagtaaatctttt-cagtggt |
90434 |
T |
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| Q |
248 |
tacatatttttgtatctca |
266 |
Q |
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| T |
90433 |
tacatatttttgtatctca |
90415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 90417 - 90327
Alignment:
| Q |
318 |
tcatgaattcccatcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgttc |
408 |
Q |
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| T |
90417 |
tcatgaattcccatccggaatttctcttcaacagcagaactgcaactcttgtctctgaagagtcatcatccttcacttaagtcctttgttc |
90327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 28751782 - 28751910
Alignment:
| Q |
228 |
agtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattc |
327 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | || | |
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| T |
28751782 |
agtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagttcgtcgatac |
28751881 |
T |
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| Q |
328 |
ccatcctgaatttctcttcagcagcagaa |
356 |
Q |
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| T |
28751882 |
ccatccgaaacttctcttcaacagcagaa |
28751910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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