View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_15 (Length: 345)
Name: NF12021_low_15
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 16471618 - 16471286
Alignment:
| Q |
1 |
tacaacgggatagaaaacttatggttgattgaga---------aaaactgaatgttgaacactttataagggagatgactcatatacctagtgtggtgtc |
91 |
Q |
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| T |
16471618 |
tacaacgggatagaaaacttctggttgattgagggggagatagaaaactgaatgttgaacactttataagggacatgactcatatacctagtgtggtgtc |
16471519 |
T |
|
| Q |
92 |
aacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatctttacatgtgttg |
191 |
Q |
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| T |
16471518 |
aacctctcattcagctaactgtctttatcattttggcaacttagaattgttttatgattggtttgttccgttgtgaaatttgagatctttacatgtgttg |
16471419 |
T |
|
| Q |
192 |
tattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttggtgacct |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
16471418 |
tattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaacaagatcaatggagtatatgttggagacct |
16471319 |
T |
|
| Q |
292 |
agatcaacagattggtgagtatgaggaacttgc |
324 |
Q |
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| T |
16471318 |
agatcaacagattggtaagtatgaggaacttgc |
16471286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 81 - 324
Target Start/End: Complemental strand, 16464504 - 16464264
Alignment:
| Q |
81 |
agtgtggtgtcaacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatctt |
180 |
Q |
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| T |
16464504 |
agtgtggtgtcaacctctcattcagctaactgtct--atcattttggcaacttagaattgttt-atgattggtttattccgttgtgaaatttgagatctt |
16464408 |
T |
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| Q |
181 |
tacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
280 |
Q |
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| T |
16464407 |
tacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
16464308 |
T |
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| Q |
281 |
gttggtgacctagatcaacagattggtgagtatgaggaacttgc |
324 |
Q |
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| T |
16464307 |
gttggagacctagatcaacagattggtaagtatgaggaacttgc |
16464264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 16493879 - 16493758
Alignment:
| Q |
203 |
atgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttggtgacctagatcaacaga |
302 |
Q |
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||||||| | |||| |||||| ||| ||| ||||||||||| ||| |||| || ||||||||||||||| ||||||||||||||||||||||||| || | |
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| T |
16493879 |
atgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttggtgacctagatcaccaaa |
16493780 |
T |
|
| Q |
303 |
ttggtgagtatgaggaacttgc |
324 |
Q |
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||| | |||||||||||||||| |
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| T |
16493779 |
ttgctaagtatgaggaacttgc |
16493758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 162 - 319
Target Start/End: Complemental strand, 44950366 - 44950209
Alignment:
| Q |
162 |
ttgtgaaatttgagatctttacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaa |
261 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
44950366 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaa |
44950267 |
T |
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| Q |
262 |
caagatcaatggagtatatgttggtgacctagatcaacagattggtgagtatgaggaa |
319 |
Q |
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| T |
44950266 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtattaggaa |
44950209 |
T |
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