View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_16 (Length: 345)
Name: NF12021_low_16
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 11224856 - 11224545
Alignment:
| Q |
1 |
ttctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatca |
100 |
Q |
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| T |
11224856 |
ttctttattaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatca |
11224757 |
T |
|
| Q |
101 |
ataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccaacatgtgggactttaa |
200 |
Q |
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| T |
11224756 |
ataacagctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaa |
11224657 |
T |
|
| Q |
201 |
gcttcttacgattttcggtattcttctcactttgttgctacaattttaaactatgatagttaatacttgtatgacaaagttttttagaatatgagattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
11224656 |
gcttcttacgattttcggtattcttctcactttgtttcaacaattttaaactatgatagtta----ttgtatgacatagttttttagaatatgagattgt |
11224561 |
T |
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| Q |
301 |
gtaaataaatattctc |
316 |
Q |
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|||||||||||||||| |
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| T |
11224560 |
gtaaataaatattctc |
11224545 |
T |
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