View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_19 (Length: 248)
Name: NF12021_low_19
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13023489 - 13023717
Alignment:
| Q |
1 |
tccaaggcggatatcacgtgatacatcatcataataataaatcatgaacttattgaaataatataactcata-ttttttaacttcactctttattagcca |
99 |
Q |
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| T |
13023489 |
tccaaggcgaatatcacgtgatacatcat---aataataaatcatgaacttattgaaataatataactcataattttttaacttcactctttattagcca |
13023585 |
T |
|
| Q |
100 |
aattcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaatc |
199 |
Q |
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| T |
13023586 |
aattcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaatc |
13023685 |
T |
|
| Q |
200 |
attgattaaattattaggataaatactaaaca |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
13023686 |
attgattaaattattaggataaatactaaaca |
13023717 |
T |
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