View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_20 (Length: 236)
Name: NF12021_low_20
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 1929635 - 1929830
Alignment:
| Q |
1 |
taaagctttggaaatgaatgaaaagtacgctgcataacaaaaatgattttccctgtttgcattcaaccatattctggttctaccattaattagcaacttc |
100 |
Q |
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| T |
1929635 |
taaagctttggaaacaaatgaaaagtatgctgcataacacaaatgattttctctgtt-gcattcaaccat--tctggttctaccattaattagcaatttc |
1929731 |
T |
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| Q |
101 |
ggctcataataagcactacttaaatgattagagtactac---ttatgtgctgaaattgtatttttacc-tacattttagcaaataatcactaaaactta |
195 |
Q |
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| T |
1929732 |
ggcacataataagcactacttaaatgattagagtactactaattatgtgctgaaattgtgtttttaccttatatttcagcacataattactaaaactta |
1929830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 1935858 - 1936071
Alignment:
| Q |
7 |
tttggaaatgaatgaaaagtacgctgcataacaaaaatgattttccctgtttgcattcaaccatattctggttctaccattaattagcaacttcggctc- |
105 |
Q |
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| T |
1935858 |
tttggaaatgaatgaaaagtatgctgcataacaaaaatgatttgcccctgttgcattcaacc--attctggttataccattaattagtaatttcggcaca |
1935955 |
T |
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| Q |
106 |
-ataataagcactacttaaatgattagagtac-tacttatgtgctgaaattgtatttttacctacattttagcaaataatcactaaaacttagtttcaga |
203 |
Q |
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| T |
1935956 |
tataataagcactacatacatgattagagtacatactaatatgctaaaattatgtttttgcctatattttagcacctaattactaaaacttagtttcaga |
1936055 |
T |
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| Q |
204 |
aacaaagttaagggaac |
220 |
Q |
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| T |
1936056 |
aacaaag-taagggaac |
1936071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 1886712 - 1886684
Alignment:
| Q |
111 |
aagcactacttaaatgattagagtactac |
139 |
Q |
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| T |
1886712 |
aagcactacttaaatgattagagtactac |
1886684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 31144385 - 31144512
Alignment:
| Q |
17 |
aatgaaaagtacgctgcataacaaaaatgattttccctgtttgcattcaaccatattctggttctaccattaattagcaacttcggctcataataagcac |
116 |
Q |
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| T |
31144385 |
aatgaaaagtatgctgcaaaacaaaa-tattttgccctgtt-gcactcaaccattctatagttctacctctaattagtaatttcagcacataataagcat |
31144482 |
T |
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| Q |
117 |
tacttaaatgattagagtactacttatgtg |
146 |
Q |
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| T |
31144483 |
ttcttaaatgattagagtactactaatgtg |
31144512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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