View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12021_low_3 (Length: 893)
Name: NF12021_low_3
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 1 - 876
Target Start/End: Original strand, 42125922 - 42126797
Alignment:
| Q |
1 |
ataaatcccaagaaaatggtatatagcatcagactcggttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125922 |
ataaatcccaagaaaatggtatatagcatcagactcggttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatca |
42126021 |
T |
|
| Q |
101 |
atttctgttataaatttaatatatcgtgactcgtggagaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126022 |
atttctgttataaatttaatagatcgtgactcgtggacaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgt |
42126121 |
T |
|
| Q |
201 |
atttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42126122 |
atttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaataa |
42126221 |
T |
|
| Q |
301 |
cacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126222 |
cacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattgga |
42126321 |
T |
|
| Q |
401 |
atataaaatgttttgctgcttggaactaacctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgt |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126322 |
atataaaatgttttggtgcttggaactaacctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgt |
42126421 |
T |
|
| Q |
501 |
atctcagctccttctttgataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126422 |
atctcagctccttctttgataatacttcctttttgaataacagcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattc |
42126521 |
T |
|
| Q |
601 |
cattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126522 |
cattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaat |
42126621 |
T |
|
| Q |
701 |
caaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126622 |
caaaactgaggaaccaattcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcc |
42126721 |
T |
|
| Q |
801 |
tggcttttataaagcgcccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcatagtttg |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42126722 |
tggcttttataaagcgcccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcgtagtttg |
42126797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 519 - 850
Target Start/End: Original strand, 24929735 - 24930066
Alignment:
| Q |
519 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
618 |
Q |
| |
|
|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
|
| Q |
619 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaat |
718 |
Q |
| |
|
||||||||||||| ||||| | | |||||||||||| || ||||| || |||| ||||| ||||||||||| || |||| || ||||||||| ||||| |
|
|
| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattgacaccagagttgggtccgtgatgtcaactgtatcaagcagaactgaggatccaat |
24929934 |
T |
|
| Q |
719 |
tcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcc |
818 |
Q |
| |
|
|||||| || | || ||||||||||| || |||||||| |||||| ||||||||||||||| |||||| || |||||||| || | ||||| |||||| |
|
|
| T |
24929935 |
tcttgctcccaacatttcaaaccagtactttagaaacactgttcctctgaggtgtgtagccaaaactttagaggaaatttcttgagtcttatatagcgcc |
24930034 |
T |
|
| Q |
819 |
caccatttgacaaaggcaattgaatagatgga |
850 |
Q |
| |
|
||||| |||||||| | ||||||||||||| |
|
|
| T |
24930035 |
caccacttgacaaaatccgttgaatagatgga |
24930066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
187 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
259 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||| | ||||| ||||||||| |||||||| |
|
|
| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
186 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
262 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||| | | || ||||||||||||||||| ||||||||||| |
|
|
| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
192 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
258 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University