View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_4 (Length: 847)
Name: NF12021_low_4
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 141 - 845
Target Start/End: Original strand, 11621320 - 11622024
Alignment:
| Q |
141 |
ggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatc |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621320 |
ggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatc |
11621419 |
T |
|
| Q |
241 |
aaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtta |
340 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621420 |
aacgacgaactcgaacgccacaaggccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtta |
11621519 |
T |
|
| Q |
341 |
ttgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcagatcttattttcacaagattcttttcgg |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621520 |
ttgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcagatcttattttcacaagattcttttcgg |
11621619 |
T |
|
| Q |
441 |
cattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621620 |
cattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgat |
11621719 |
T |
|
| Q |
541 |
gtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatcttt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
11621720 |
gtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatcttt |
11621819 |
T |
|
| Q |
641 |
aatacacaaattagaactatatttatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgattta |
740 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11621820 |
aatacacaaattagaactatattcatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgattta |
11621919 |
T |
|
| Q |
741 |
tcagagatattaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacacctatgctctgtgct |
840 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11621920 |
tcagagatattaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacacctatgctttgtgct |
11622019 |
T |
|
| Q |
841 |
cctcc |
845 |
Q |
| |
|
|||| |
|
|
| T |
11622020 |
tctcc |
11622024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 141 - 829
Target Start/End: Original strand, 11639811 - 11640491
Alignment:
| Q |
141 |
ggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatc |
240 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11639811 |
ggcagacagttcagtatcatttttattggacaagctaacatggttacttcaagaggaagtaaatctacaaagaggagtccgtgaagatgttcaatacatc |
11639910 |
T |
|
| Q |
241 |
aaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtta |
340 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| || |
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|
| T |
11639911 |
aaagacgaacttgaacgccacaagtccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagata |
11640010 |
T |
|
| Q |
341 |
ttgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcagatcttattttcacaagattcttttcgg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| || |||||||||| |||| || |
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|
| T |
11640011 |
ttgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatcacaagattgtttttgg |
11640110 |
T |
|
| Q |
441 |
cattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgat |
540 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||| |
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|
| T |
11640111 |
aattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatac----- |
11640205 |
T |
|
| Q |
541 |
gtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatcttt |
640 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||| || ||| ||||| ||||| || ||| ||||| |||| | |||| | |
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|
| T |
11640206 |
----cttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattatatacaatacatgctc |
11640300 |
T |
|
| Q |
641 |
aatacacaaattagaactatatttatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgattta |
740 |
Q |
| |
|
||| ||||||||| ||||||| | |||||||||| |||||||||||| |||| ||||||| |||| ||||||||||||||||||||| |||||||||| |
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|
| T |
11640301 |
aatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttgattta |
11640400 |
T |
|
| Q |
741 |
tcagagata--ttaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta |
829 |
Q |
| |
|
||| ||||| |||| ||||||| |||| |||||||||| |||||| ||| | ||||||||| | |||| | |||| ||||||||||||| |
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|
| T |
11640401 |
tcaaagatattttaaaaatacctgatttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaacaccta |
11640491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 141 - 627
Target Start/End: Complemental strand, 11606253 - 11605764
Alignment:
| Q |
141 |
ggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacatc |
240 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || || | |||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||| |
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|
| T |
11606253 |
ggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacatc |
11606154 |
T |
|
| Q |
241 |
aaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtta |
340 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| | | || |||| || ||||||||||||| ||||||||||||||||||||||||||||| |||| || |
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|
| T |
11606153 |
aaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaagggtaagagata |
11606054 |
T |
|
| Q |
341 |
ttgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcaga---tcttattttcacaagattctttt |
437 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||| || | || | |||| |||||||||| || ||| |
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|
| T |
11606053 |
ttgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttt |
11605954 |
T |
|
| Q |
438 |
cggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacct |
537 |
Q |
| |
|
| ||| |||||||||||| ||||||||| |||||||||| |||| || ||||||||| |||||||||| |||| | | |||||||| ||| || |
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|
| T |
11605953 |
tgacatcaagaccatgaaacctagacacagaatagcttcagatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgtccaatgatatct |
11605854 |
T |
|
| Q |
538 |
gatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
627 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
11605853 |
ggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
11605764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 11621197 - 11621252
Alignment:
| Q |
19 |
agaaatacttagaaatctcatcataaagttcttgaaacttttctcatctagagagc |
74 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11621197 |
agaaatacttagaaatctcatcatcaagttcttgaaacttttctcatctagagagc |
11621252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 627
Target Start/End: Complemental strand, 14484668 - 14484598
Alignment:
| Q |
557 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
627 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcat |
14484598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 11639295 - 11639339
Alignment:
| Q |
29 |
agaaatctcatcataaagttcttgaaacttttctcatctagagagc |
74 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
11639295 |
agaattctcatcatcaagttcttgaaac-tttctcatctagagagc |
11639339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 627
Target Start/End: Original strand, 33735417 - 33735487
Alignment:
| Q |
557 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
627 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
33735487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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