View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12021_low_6 (Length: 683)
Name: NF12021_low_6
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12021_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 137 - 667
Target Start/End: Complemental strand, 28382800 - 28382272
Alignment:
| Q |
137 |
gatataatttaaagtctttaattggtgcccttgagacatagttaacatttttcttatcttaaatagatcttagttaacatacacaattgcgcgcgtagat |
236 |
Q |
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| T |
28382800 |
gatataatttaaagtctttaactggtgccctagagacatagttaacatttttcatatcttaaatagatcttagttaacatacacaattgcgcgcgtagat |
28382701 |
T |
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| Q |
237 |
atatttgatttatcgaaaaatgttgatattacatcaaatattgaatttaattttaaaacaaaaaattgcatggggtaattattattaatatcagtgacat |
336 |
Q |
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| T |
28382700 |
atatttgatttatcgaaaaatgttgatattacatcaaatattgaatttaattttaaaataaaaaattgcatggggtaattattattaatatcagtgacat |
28382601 |
T |
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| Q |
337 |
taataatcaatattannnnnnngacaaaaattaataatcaatattttataatttgaaggactataacattggaccgacccttcttgaacaacttgaattt |
436 |
Q |
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| T |
28382600 |
taataatcaatattatttttttgacaaaaattaataatcaatattttataatttgaaggacta--acattggaccgacccttcttgaacaacttgaattt |
28382503 |
T |
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| Q |
437 |
aatttatataaatagttattgtaaaaagagttttccacataattatatgagcatgacaaattatatgttcttaactcattaaataatgtataataattca |
536 |
Q |
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| T |
28382502 |
aatttatataaatagttattgtaaaaagagttttccacataattatatgagcatgaaaaattatatgtttttaactcattaaataatgtataataattca |
28382403 |
T |
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| Q |
537 |
cgtaaaacttttttacatgaaatagttttaaactcataaatttcactatgcaattcttttgttgttagggatcataaatataggaacataccctctatca |
636 |
Q |
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| T |
28382402 |
cgtaaaacatttttacatgaaatagttttaaactcataaatttcactatgcaattcttttgttgtaagggatcataaatataggaacataccctctatca |
28382303 |
T |
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| Q |
637 |
tcttcatcgttttcagattcaagaatgttgt |
667 |
Q |
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| T |
28382302 |
tcttcatcgttttcagattcaagaatgttgt |
28382272 |
T |
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