View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12021_low_7 (Length: 665)

Name: NF12021_low_7
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12021_low_7
NF12021_low_7
[»] chr5 (14 HSPs)
chr5 (1-247)||(38180888-38181134)
chr5 (1-247)||(38189997-38190243)
chr5 (1-247)||(38208112-38208358)
chr5 (1-247)||(38217222-38217468)
chr5 (1-247)||(38456248-38456494)
chr5 (1-223)||(26033102-26033324)
chr5 (304-486)||(38180626-38180808)
chr5 (304-506)||(38190323-38190520)
chr5 (304-486)||(38207850-38208032)
chr5 (304-506)||(38217548-38217745)
chr5 (304-486)||(38455986-38456168)
chr5 (304-506)||(26033448-26033645)
chr5 (103-222)||(38447447-38447566)
chr5 (320-442)||(38447136-38447258)
[»] chr4 (3 HSPs)
chr4 (305-506)||(53351852-53352053)
chr4 (565-649)||(53352112-53352196)
chr4 (102-213)||(53351321-53351429)
[»] chr1 (2 HSPs)
chr1 (98-213)||(38342739-38342857)
chr1 (98-213)||(38446932-38447050)
[»] chr3 (1 HSPs)
chr3 (1-75)||(6067787-6067860)
[»] chr6 (1 HSPs)
chr6 (138-204)||(4121643-4121709)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 38181134 - 38180888
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  38181134 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta 38181035  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181034 ctattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 38180935  T
Q  201 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38180934 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 38180888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38189997 - 38190243
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  38189997 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta 38190096  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190097 ctattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 38190196  T
Q  201 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38190197 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 38190243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 38208358 - 38208112
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  38208358 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta 38208259  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208258 ctattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 38208159  T
Q  201 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38208158 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 38208112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38217222 - 38217468
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  38217222 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta 38217321  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217322 ctattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 38217421  T
Q  201 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38217422 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 38217468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 38456494 - 38456248
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  38456494 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggcta 38456395  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456394 ctattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 38456295  T
Q  201 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38456294 tatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac 38456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26033102 - 26033324
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttcttgtgaatcctcaatttgttggcta 100  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  26033102 aagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatgaaattcatcttcttgtgaatcctcaatttgttggcta 26033201  T
Q  101 ctattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcat 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  26033202 ctattcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcat 26033301  T
Q  201 tatcgcttcttcccggtaactga 223  Q
    |||||||||||||||||||||||    
T  26033302 tatcgcttcttcccggtaactga 26033324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 486
Target Start/End: Complemental strand, 38180808 - 38180626
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38180808 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca 38180709  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttcca 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38180708 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttcca 38180626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 506
Target Start/End: Original strand, 38190323 - 38190520
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38190323 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca 38190422  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttccattccaatttctggttcc 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||     |||||||||||||    
T  38190423 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttcc-----aatttctggttcc 38190517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 486
Target Start/End: Complemental strand, 38208032 - 38207850
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38208032 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca 38207933  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttcca 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38207932 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttcca 38207850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 506
Target Start/End: Original strand, 38217548 - 38217745
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38217548 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca 38217647  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttccattccaatttctggttcc 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||     |||||||||||||    
T  38217648 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttcc-----aatttctggttcc 38217742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 486
Target Start/End: Complemental strand, 38456168 - 38455986
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38456168 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca 38456069  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttcca 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38456068 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttcca 38455986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 304 - 506
Target Start/End: Original strand, 26033448 - 26033645
Alignment:
Q  304 tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca 403  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  26033448 tacctcctcagccagcttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcaca 26033547  T
Q  404 tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttccattccaatttctggttcc 503  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||     |||||||||||||    
T  26033548 tctggttgcaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccggcatttttcgatacctcgttcc-----aatttctggttcc 26033642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 38447566 - 38447447
Alignment:
Q  103 attcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatta 202  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  38447566 attcaactcatcatccagttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcatta 38447467  T
Q  203 tcgcttcttcccggtaactg 222  Q
    ||| ||||||| || |||||    
T  38447466 tcggttcttccaggcaactg 38447447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 442
Target Start/End: Complemental strand, 38447258 - 38447136
Alignment:
Q  320 ttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat 419  Q
    ||||||||||||||| ||||| ||||  ||   |||| ||| |||||| ||| |||||||| |||||||||||||||||| ||| | |||  ||||| ||    
T  38447258 ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat 38447159  T
Q  420 tataccatcttagacgacaactt 442  Q
    |||||||||| | ||| ||||||    
T  38447158 tataccatctaaaacggcaactt 38447136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 305 - 506
Target Start/End: Original strand, 53351852 - 53352053
Alignment:
Q  305 acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacat 404  Q
    ||||| |||||||||||||||||||||||||||||| | ||  || |||||  ||| ||||| |||||||||||||||||||| || ||||| |||||||    
T  53351852 acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacat 53351951  T
Q  405 ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccacatttcttgatacctcgttccattccaatttctggttcca 504  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53351952 ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcatttcttgatacctcgttccattccaatttctggttcca 53352051  T
Q  505 tg 506  Q
    ||    
T  53352052 tg 53352053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 565 - 649
Target Start/End: Original strand, 53352112 - 53352196
Alignment:
Q  565 aaccctttgttagtatccgatgatgaagacattgtgatgataagtataaagaacgcttaaactttgagaagaaatatatgaaact 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  53352112 aaccctttgttagtatccgatgatgaagacattgtgatgataagtaataagaacgcttaaactttgagaagaaatatatgaaact 53352196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 53351321 - 53351429
Alignment:
Q  102 tattcagctcatcatccagttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatt 201  Q
    |||||| |||||||| ||||||||| ||||| || ||||||||||    |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  53351321 tattcaactcatcattcagttccatcttgtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcatt 53351417  T
Q  202 atcgcttcttcc 213  Q
    ||||||||||||    
T  53351418 atcgcttcttcc 53351429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 38342857 - 38342739
Alignment:
Q  98 ctactattcagctcatcatccagttccatgttgtcg---gggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttga 194  Q
    ||||||||||   ||||| ||||||||||||||| |   |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||    
T  38342857 ctactattcaaaccatcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttga 38342758  T
Q  195 tgtcattatcgcttcttcc 213  Q
    ||||||||||| |||||||    
T  38342757 tgtcattatcggttcttcc 38342739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 38447050 - 38446932
Alignment:
Q  98 ctactattcagctcatcatccagttccatgttgtcg---gggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttga 194  Q
    ||||||||||   ||||| ||||||||||||||| |   |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||    
T  38447050 ctactattcaaaccatcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttga 38446951  T
Q  195 tgtcattatcgcttcttcc 213  Q
    ||||||||||| |||||||    
T  38446950 tgtcattatcggttcttcc 38446932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6067787 - 6067860
Alignment:
Q  1 aagtgtttcagttagctcatcaaaaattgatggatattttctaaatttcaattgtggaatatgaaattcaccttc 75  Q
    |||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  6067787 aagtgtttcatttatctcataaaaaatttatggatattttctaaatttcaattgtggtatat-aaattcatcttc 6067860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 4121709 - 4121643
Alignment:
Q  138 agggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc 204  Q
    ||||||| | ||||| ||||| |  |||||||||||| ||||||||||||||||||||  |||||||    
T  4121709 agggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc 4121643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University