View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12021_low_9 (Length: 526)

Name: NF12021_low_9
Description: NF12021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12021_low_9
NF12021_low_9
[»] chr1 (1 HSPs)
chr1 (1-526)||(2528702-2529227)


Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 2528702 - 2529227
Alignment:
Q  1 tccttccaatttcttcacagctatttgagtttcatcttttagaattcctttatataccgaaccgaaaccacctcgacctaacttcaccgagaagttattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2528702 tccttccaatttcttcacagctatttgagtttcatcttttagaattcctttatataccgaaccgaaaccaccttgacctaacttcaccgagaagttattc 2528801  T
Q  101 gtcgcagtttctaaattgttgtagctgaaacggatcggcatactagttaaactcttcaagaaatcgtcatcaccgtctgaattctgaaccagagattcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2528802 gtcgcagtttctaaattgttgtagctgaaacggatcggcatactagttaaactcttcaagaaatcgtcatcaccgtctgaattctcgaccagagattcag 2528901  T
Q  201 gcaaattttcctttttctttgagcattttagtcccacataaatcatgccagaaatgacaaacaatgttactattacaatgatcacaacaactattgtctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2528902 gcaaattttcctttttctttgagcattttagtcccacataaatcatgccagaaatgacaaacaatgttactattacaatgatcacaacaactattgtctg 2529001  T
Q  301 cacattcctgtttctactttctgctgtgtctgtttctgtgtcactacttccgtctcttgagactttaatgtaagagacaaaaccagaatcattatcagtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  2529002 cacattcctgtttctactttctgctgtgtctgtttctgtgtcactacttccgtctcttgagactttaatgtaagaggcaaagccagaatcattatcagtt 2529101  T
Q  401 ttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagcaagacatgagcagttttcattgcaagaatttttgc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2529102 ttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagcaagacatgagcagttttcactgcaagaatttttgc 2529201  T
Q  501 aacaagtcaaatcggttttcgaagaa 526  Q
    ||| | |||||||||||||| |||||    
T  2529202 aaccaatcaaatcggttttcaaagaa 2529227  T

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