View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12022_high_1 (Length: 522)
Name: NF12022_high_1
Description: NF12022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12022_high_1 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: scaffold0302 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 18969 - 19233
Alignment:
| Q |
3 |
gtgaagggagggaaagaggatggaaggattgagtttccatagtttggaataaatatgaaaaggtaatggaaagaaagatttggctaggtcccacctcaaa |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| || |||||| |||| |
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| T |
18969 |
gtgaagggagggaaagaggatcgaaggattgagtttccattgtttggaacaaatataaaaaggtaatggaaagaaagatttagctgggacccaccccaaa |
19068 |
T |
|
| Q |
103 |
atcctttccgcgctcaataggaccgaaaacgagagaatgggctcaatttttgggcgaaaagacaaaattgcccctgaatcctaatacaataaatattgta |
202 |
Q |
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||||||| |||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
19069 |
atcctttacgcgctcaattggacggaaagcgggagaatgggctcaatttttgggcgaaaagacaaaagtgcccctaaatcctaatacaat-aatattgta |
19167 |
T |
|
| Q |
203 |
aatatgacc--gtgtacactccagcttctctcatgaaactataagagagttcactgttttctcttt |
266 |
Q |
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||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19168 |
aatatgatcgtgtgtatactccagcttctctcatgaaactataagagagttcattgttttctcttt |
19233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 403 - 506
Target Start/End: Original strand, 19428 - 19530
Alignment:
| Q |
403 |
cattatcttctatgcatgaaattgattttcttttgatgaaattttattccttctatgttttctcccctcattttattatactttgaatgcttttgggatg |
502 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19428 |
cattatcttctatgcatgaaattgattttgttttgatgaaattttattccttctatgttttctcccctcattttattat-ctttgaatgcttttgggatg |
19526 |
T |
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| Q |
503 |
aagt |
506 |
Q |
| |
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|||| |
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|
| T |
19527 |
aagt |
19530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 19288 - 19341
Alignment:
| Q |
262 |
tctttaccatcaatcagtaacttattgttttgtaaggtactcttctaactctct |
315 |
Q |
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||||| |||||||||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
19288 |
tctttgccatcaatcagtaactcattgttttgtaagctactattctaactctct |
19341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 12856432 - 12856696
Alignment:
| Q |
3 |
gtgaagggagggaaagaggatggaaggattgagtttccatagtttggaataaatatgaaaaggtaatggaaagaaagatttggctaggtcccacctcaaa |
102 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| || |||||| |||| |
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| T |
12856432 |
gtgaagggagggaaaaaggatggaaggattgagtttccattgtttggaacaaatataaaaaggtaatggaaagaaagatttagctgggacccaccccaaa |
12856531 |
T |
|
| Q |
103 |
atcctttccgcgctcaataggaccgaaaacgagagaatgggctcaatttttgggcgaaaagacaaaattgcccctgaatcctaatacaataaatattgta |
202 |
Q |
| |
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|||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
12856532 |
atcctttccgcgctcaattggacggaaagtgggagaatgggctcaatttttgggcgaaaagacaaaagtgcccctaaatcctaatacaat-aatattgta |
12856630 |
T |
|
| Q |
203 |
aatatgacc--gtgtacactccagcttctctcatgaaactataagagagttcactgttttctcttt |
266 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
12856631 |
aatatgcccgtgtgtatactccagcttctctcatgaaactagaagagagttcattgttttctcttt |
12856696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 403 - 506
Target Start/End: Original strand, 12856891 - 12856993
Alignment:
| Q |
403 |
cattatcttctatgcatgaaattgattttcttttgatgaaattttattccttctatgttttctcccctcattttattatactttgaatgcttttgggatg |
502 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12856891 |
cattatcttctatgcatgaaattgattttgttttgatgaaattttattccttatatgttttctcccctcattttattat-ctttgaatgcttttgggatg |
12856989 |
T |
|
| Q |
503 |
aagt |
506 |
Q |
| |
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|||| |
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|
| T |
12856990 |
aagt |
12856993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 12856751 - 12856804
Alignment:
| Q |
262 |
tctttaccatcaatcagtaacttattgttttgtaaggtactcttctaactctct |
315 |
Q |
| |
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||||| ||||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
12856751 |
tctttgccatcaatcagtaacccattgttgtgtaaggtactattctaactctct |
12856804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 20257982 - 20257806
Alignment:
| Q |
1 |
tagtgaagggagggaaagaggatggaaggattgagtttccatagtttggaataaatatgaaaaggtaatggaaagaaagatttggctaggtcccacctca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |||||| ||||||| | |||||||||| ||||| | || |||||| | |
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| T |
20257982 |
tagtgaagggaggtaaagaggatggaaggattgtgtttccatggttttgaacaaatataaaaaggtcaaggaaagaaagttttggttggggcccaccaaa |
20257883 |
T |
|
| Q |
101 |
aaatcctttccgcgctcaataggaccgaaaacgagagaatgggctcaatttttgggcgaaaagacaaaattgcccct |
177 |
Q |
| |
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||||||||||| |||||||| |||| |||| | |||||||| ||||||||||| || ||||||||||| ||||||| |
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| T |
20257882 |
aaatcctttccacgctcaattggactgaaagtgggagaatggactcaatttttgagcaaaaagacaaaagtgcccct |
20257806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 20257539 - 20257435
Alignment:
| Q |
403 |
cattatcttctatgcatgaaattgattttcttttgatgaaattttattccttctatgttttctcccctcattttattatactttg-aatgcttttgggat |
501 |
Q |
| |
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||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
20257539 |
cattatcttctatgcatgagatttattttgttttgatgaaattttattccttgtatgttttctcccctcattttattatactttgaaatgcttttcggat |
20257440 |
T |
|
| Q |
502 |
gaagt |
506 |
Q |
| |
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||||| |
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|
| T |
20257439 |
gaagt |
20257435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 42823435 - 42823522
Alignment:
| Q |
403 |
cattatcttctatgcatgaaattgattttctttt-gatgaaattttattccttctatgttttctcccctcattttattatactttgaa |
489 |
Q |
| |
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||||||||| | | |||||||||||||||||||| |||||| | || |||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
42823435 |
cattatcttttgtccatgaaattgattttctttttgatgaattgttgttccttctgtgttttctcccctcattatattgtactttgaa |
42823522 |
T |
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