View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12022_high_2 (Length: 445)

Name: NF12022_high_2
Description: NF12022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12022_high_2
NF12022_high_2
[»] chr7 (12 HSPs)
chr7 (72-180)||(14735357-14735465)
chr7 (66-180)||(14736110-14736224)
chr7 (78-139)||(39045219-39045280)
chr7 (78-134)||(30414187-30414243)
chr7 (78-134)||(25137418-25137474)
chr7 (78-134)||(25137911-25137967)
chr7 (79-139)||(39044348-39044408)
chr7 (96-139)||(41224823-41224866)
chr7 (98-147)||(29006374-29006423)
chr7 (98-147)||(29007171-29007220)
chr7 (72-128)||(33140285-33140342)
chr7 (72-127)||(42607081-42607137)
[»] chr5 (17 HSPs)
chr5 (66-205)||(17590559-17590698)
chr5 (72-180)||(36912246-36912351)
chr5 (79-180)||(36912932-36913033)
chr5 (72-180)||(17591324-17591431)
chr5 (72-138)||(35107586-35107652)
chr5 (78-139)||(8320881-8320942)
chr5 (124-177)||(39086797-39086850)
chr5 (78-134)||(3595783-3595839)
chr5 (78-134)||(3596279-3596335)
chr5 (78-134)||(7858333-7858389)
chr5 (78-134)||(8321373-8321429)
chr5 (78-134)||(12330154-12330210)
chr5 (78-134)||(12330648-12330704)
chr5 (78-134)||(31078462-31078518)
chr5 (72-128)||(4790209-4790265)
chr5 (78-118)||(25993570-25993610)
chr5 (78-134)||(29759603-29759659)
[»] chr4 (16 HSPs)
chr4 (72-180)||(19129525-19129633)
chr4 (69-139)||(19130382-19130452)
chr4 (72-139)||(3167458-3167525)
chr4 (72-145)||(14472485-14472559)
chr4 (70-177)||(231992-232099)
chr4 (86-139)||(32291336-32291389)
chr4 (72-128)||(25655629-25655687)
chr4 (78-139)||(39413602-39413663)
chr4 (78-134)||(5235380-5235436)
chr4 (78-134)||(6934488-6934544)
chr4 (78-134)||(20174976-20175032)
chr4 (71-139)||(32292196-32292264)
chr4 (101-177)||(47377541-47377616)
chr4 (71-128)||(46764251-46764310)
chr4 (72-147)||(34154794-34154869)
chr4 (78-134)||(39412771-39412827)
[»] chr3 (20 HSPs)
chr3 (6-71)||(52671233-52671298)
chr3 (100-177)||(32355893-32355969)
chr3 (78-134)||(36992159-36992215)
chr3 (78-134)||(37017599-37017655)
chr3 (72-141)||(8327163-8327231)
chr3 (98-159)||(37105038-37105098)
chr3 (78-134)||(5113204-5113260)
chr3 (78-134)||(20586078-20586134)
chr3 (78-134)||(20586570-20586626)
chr3 (78-134)||(24394253-24394309)
chr3 (78-134)||(26006152-26006208)
chr3 (79-134)||(45000813-45000868)
chr3 (128-170)||(25329908-25329950)
chr3 (72-126)||(44021286-44021340)
chr3 (72-160)||(45297549-45297637)
chr3 (78-134)||(5113694-5113750)
chr3 (78-134)||(24394720-24394776)
chr3 (128-168)||(42179154-42179194)
chr3 (128-168)||(43638030-43638070)
chr3 (78-134)||(45000321-45000377)
[»] scaffold1052 (1 HSPs)
scaffold1052 (100-175)||(359-433)
[»] chr2 (13 HSPs)
chr2 (100-173)||(6182121-6182193)
chr2 (208-253)||(14360438-14360483)
chr2 (370-428)||(14360596-14360654)
chr2 (78-139)||(6610024-6610085)
chr2 (78-139)||(15562021-15562082)
chr2 (78-134)||(7994061-7994117)
chr2 (78-134)||(15561547-15561603)
chr2 (78-134)||(16903883-16903939)
chr2 (78-134)||(30899396-30899452)
chr2 (72-128)||(34617653-34617710)
chr2 (78-134)||(6609557-6609613)
chr2 (78-134)||(7994559-7994615)
chr2 (78-134)||(37996569-37996625)
[»] chr6 (8 HSPs)
chr6 (78-134)||(7635621-7635677)
chr6 (78-134)||(7635130-7635186)
chr6 (78-134)||(18290481-18290537)
chr6 (101-177)||(24126002-24126077)
chr6 (72-127)||(25067842-25067898)
chr6 (72-117)||(930923-930969)
chr6 (78-134)||(18290221-18290277)
chr6 (78-134)||(18605845-18605901)
[»] chr1 (9 HSPs)
chr1 (72-160)||(17151002-17151090)
chr1 (78-134)||(38468912-38468968)
chr1 (78-134)||(43755855-43755911)
chr1 (78-134)||(43756333-43756389)
chr1 (78-120)||(38328886-38328928)
chr1 (85-134)||(32537658-32537707)
chr1 (70-128)||(28371694-28371753)
chr1 (78-134)||(32538488-32538544)
chr1 (78-134)||(38469271-38469327)
[»] chr8 (2 HSPs)
chr8 (123-168)||(41707370-41707415)
chr8 (78-134)||(30846022-30846078)
[»] scaffold0508 (1 HSPs)
scaffold0508 (78-134)||(4139-4195)
[»] scaffold0155 (1 HSPs)
scaffold0155 (98-138)||(17366-17406)
[»] scaffold0129 (1 HSPs)
scaffold0129 (79-150)||(42493-42565)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-134)||(202269-202325)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 14735357 - 14735465
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 171  Q
    ||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14735357 ggtggagtttagcatgggaaagactattttttcccaccatggaaaaattgtttttgaatcatttgatttaagaggaacattgatcttatgatagtctctt 14735456  T
Q  172 cacacttga 180  Q
    |||||||||    
T  14735457 cacacttga 14735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 14736224 - 14736110
Alignment:
Q  66 attattggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatag 165  Q
    ||||| |||||||||||  ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  14736224 attatgggtggggtttaacatgggaaaggctattttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataa 14736125  T
Q  166 tctcttcacacttga 180  Q
    |||||||||||||||    
T  14736124 tctcttcacacttga 14736110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 39045280 - 39045219
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||| ||| ||||||||||||||| |||||||||||| |||| |||||||    
T  39045280 gtttagcatgggaaaggctactttttcccaccatggaaaagttgtttttcaaccctttgatt 39045219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30414187 - 30414243
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  30414187 gtttagtatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 30414243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 25137418 - 25137474
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  25137418 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 25137474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 25137967 - 25137911
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||  |||| |||||||    
T  25137967 gtttagcatgggaaagactaatttttcccaccatgggaaaattagtttttaaccatt 25137911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 39044348 - 39044408
Alignment:
Q  79 tttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||  || ||||||||||||||||||| |||||||| |||| |||||||    
T  39044348 tttagtctgggaaaggttactttttcccaccatgggaaaattgtttttcaaccctttgatt 39044408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 41224866 - 41224823
Alignment:
Q  96 tattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||||||||||||||||||||||  |||| ||||||||||||    
T  41224866 tattttttcccaccatgggaaagttagtttttaaccatttgatt 41224823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29006374 - 29006423
Alignment:
Q  98 ttttttcccaccatgggaaagttgtttttgaaccatttgatttaagagga 147  Q
    |||||||||||||||||||||||  |||| ||||||| |||| |||||||    
T  29006374 ttttttcccaccatgggaaagttagtttttaaccattagattaaagagga 29006423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 29007220 - 29007171
Alignment:
Q  98 ttttttcccaccatgggaaagttgtttttgaaccatttgatttaagagga 147  Q
    |||||||||||||||||||||||  |||| ||||||| |||| |||||||    
T  29007220 ttttttcccaccatgggaaagttagtttttaaccattagattaaagagga 29007171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 33140342 - 33140285
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagtt-gtttttga 128  Q
    |||| |||||||||||||||||    ||||||||||||||||||||||| ||||||||    
T  33140342 ggtgaggtttagtatgggaaagttacttttttcccaccatgggaaagttagtttttga 33140285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 42607081 - 42607137
Alignment:
Q  72 ggtggggtttagtatgggaaagactattt-tttcccaccatgggaaagttgtttttg 127  Q
    |||||||||||| |||||||||   | || |||||||||||||||||||||||||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagttgtttttg 42607137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 17590559 - 17590698
Alignment:
Q  66 attattggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatag 165  Q
    ||||| || ||||||||  ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  17590559 attatgggcggggtttaacatgagaaagactattttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataa 17590658  T
Q  166 tctcttcacacttgannnnnnncttcactctttccctttc 205  Q
    |||||||||||||||       ||||||||||||||||||    
T  17590659 tctcttcacacttgatttttttcttcactctttccctttc 17590698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 36912246 - 36912351
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 171  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  36912246 ggtggggtttagcatgggaaaggctattttttcccaccatgggaaagttgtttttgaaccatttgatttaa---gaacattgatcttatgatagtctctt 36912342  T
Q  172 cacacttga 180  Q
    |||||||||    
T  36912343 cacacttga 36912351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 36913033 - 36912932
Alignment:
Q  79 tttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacactt 178  Q
    ||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36913033 tttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacactt 36912934  T
Q  179 ga 180  Q
    ||    
T  36912933 ga 36912932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 17591431 - 17591324
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 171  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17591431 ggtgggatttagcatgggaaagactattttttcc-accatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttataatagtctctt 17591333  T
Q  172 cacacttga 180  Q
    || ||||||    
T  17591332 caaacttga 17591324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 35107652 - 35107586
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgat 138  Q
    |||||||||||| ||  ||||  ||||||||||||||||| | ||||||||||||||||||||||||    
T  35107652 ggtggggtttagcataagaaatgctattttttcccaccatagaaaagttgtttttgaaccatttgat 35107586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 8320881 - 8320942
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| ||||||| ||||    
T  8320881 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagatt 8320942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 39086797 - 39086850
Alignment:
Q  124 tttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 177  Q
    |||||||||||||||  ||||| |||||||||||||| |||| |||||||||||    
T  39086797 tttgaaccatttgataaaagagaaacattgatcttatcatagactcttcacact 39086850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 3595783 - 3595839
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  3595783 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 3595839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 3596335 - 3596279
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||  |||| |||||||    
T  3596335 gtttagcatgggaaagactaatttttcccaccatgggaaaattagtttttaaccatt 3596279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 7858333 - 7858389
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  7858333 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 7858389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 8321429 - 8321373
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  8321429 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 8321373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 12330154 - 12330210
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  12330154 gtttagcatgggaaaggctaatttttcccaccatgggaaagttaatttttaaccatt 12330210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 12330704 - 12330648
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  12330704 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 12330648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 31078462 - 31078518
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||  |||| |||||||    
T  31078462 gtttagcatgggaaagactaattttttccaccatgggaaagttagtttttaaccatt 31078518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 4790265 - 4790209
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttga 128  Q
    |||||||||||| ||||||||||   || ||||||| |||||||||||| |||||||    
T  4790265 ggtggggtttaggatgggaaagagggttgtttcccatcatgggaaagttatttttga 4790209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 25993610 - 25993570
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaag 118  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  25993610 gtttagtctgggaaaggctagtttttcccaccatgggaaag 25993570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 29759603 - 29759659
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||| |||| |||||||||||  |||| |||||||    
T  29759603 gtttagcatgggaaagactaattttttccactatgggaaagttagtttttaaccatt 29759659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 19129525 - 19129633
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 171  Q
    ||||| |||||| |||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19129525 ggtggagtttagcatgaaaaaggctattttctcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 19129624  T
Q  172 cacacttga 180  Q
    |||||||||    
T  19129625 cacacttga 19129633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 19130452 - 19130382
Alignment:
Q  69 attggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  19130452 attggtggggtttagcatgggaaagactattttttcccatcatgggaaaattgtttttggaccatttgatt 19130382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 3167525 - 3167458
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||||||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  3167525 ggtggggtttagcatgggaaagattactttttcccaccatgggaaagttgttttttaaccatttgatt 3167458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 14472485 - 14472559
Alignment:
Q  72 ggtggggtttagtatgggaaagacta--ttttttcccaccatgggaaagttgtttttgaaccatttgatttaagag 145  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||| |||||||||||| |||||    
T  14472485 ggtggggtttagtctgggaaagactattttttttcccaccatggaaaagttgttttt-aaccatttgattaaagag 14472559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 232099 - 231992
Alignment:
Q  70 ttggtggggtttagtatgggaaagactattt-tttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtct 168  Q
    ||||||||||||||||||||||||   | || |||||||||||||||||||   |||| ||||||| |||  | |||||||||||||||||| |||||||    
T  232099 ttggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaatttt-aaccattagataaatgaggaacattgatcttatcatagtct 232001  T
Q  169 cttcacact 177  Q
    || ||||||    
T  232000 ctccacact 231992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 32291336 - 32291389
Alignment:
Q  86 tgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||| |||||||    
T  32291336 tgggaaaggctattttttcccactatgggaaagttgtttttcaaccctttgatt 32291389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 25655687 - 25655629
Alignment:
Q  72 ggtggggtttagtatgggaaagacta-ttttttcccaccatgggaaagtt-gtttttga 128  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  25655687 ggtggggtttaatttgggaaagactagttttttcccaccatgggaaagttagtttttga 25655629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 39413663 - 39413602
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||  |||| ||||||| ||||    
T  39413663 gtttagaatgggaaagactaatttttcccaccataggaaagttagtttttaaccattggatt 39413602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 5235380 - 5235436
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  5235380 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 5235436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 6934544 - 6934488
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||  |||| |||||||    
T  6934544 gtttagcatgggaaagactaattttttccaccatgggaaagttagtttttaaccatt 6934488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 20174976 - 20175032
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  20174976 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20175032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 32292264 - 32292196
Alignment:
Q  71 tggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||| |||||||  ||| |||||||||||||| ||||||| ||||| |||| |||||||    
T  32292264 tggtggcgtttagtctgggaaatgctactttttcccaccatgagaaagttatttttcaaccctttgatt 32292196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 47377616 - 47377541
Alignment:
Q  101 tttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 177  Q
    |||||||||||||||||||| ||||  | ||||| ||||||||||||||||| || |||| ||||||| | ||||||    
T  47377616 tttcccaccatgggaaagttattttc-agccattagatttaagaggaacattaattttattatagtctatccacact 47377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 46764251 - 46764310
Alignment:
Q  71 tggtggggtttagtatgggaaagacta-ttttttcccaccatgggaaagtt-gtttttga 128  Q
    |||||||||||| | ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  46764251 tggtggggtttaatttggaaaagactagttttttcccaccatgggaaagttagtttttga 46764310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 34154794 - 34154869
Alignment:
Q  72 ggtggggtttagtatgggaaa-gactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagagga 147  Q
    |||||||||||| |||||||| ||   || |||||||||||||||||| | ||||| |||||||||||| |||||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaag-tatttttcaaccatttgattaaagagga 34154869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 39412771 - 39412827
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||| ||||||||||||  |||| |||||||    
T  39412771 gtttagcatgggaaaggctaatttttcccatcatgggaaagttagtttttaaccatt 39412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 52671298 - 52671233
Alignment:
Q  6 agacatgcggtgggcaaaaatgtatatattttatatctaatcgtttatgaagatgatcatattatt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52671298 agacatgcggtgggcaaaaatgtatatattttatatctaatcgtttatgaagatgatcatattatt 52671233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 32355893 - 32355969
Alignment:
Q  100 ttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 177  Q
    |||| ||||||| ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  32355893 tttttccaccataggaaagtaggttttga-ccattagatttaagatgaacattgatcttatgatagtctcttcacact 32355969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 36992215 - 36992159
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  36992215 gtttagtatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 36992159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 37017655 - 37017599
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  37017655 gtttagtatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 37017599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 8327231 - 8327163
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgattta 141  Q
    ||||| |||||| ||||||||||||| ||||| |||||||||||||||| ||| || |||||| ||||||    
T  8327231 ggtggagtttagcatgggaaagactaattttttccaccatgggaaagttttttctg-accattagattta 8327163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 37105098 - 37105038
Alignment:
Q  98 ttttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatctta 159  Q
    ||||||||||||||||||||||| ||||| ||||||| |||| ||  |||||||||||||||    
T  37105098 ttttttcccaccatgggaaagtt-tttttaaaccattagattaaaagggaacattgatctta 37105038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 5113204 - 5113260
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  5113204 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 5113260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 20586078 - 20586134
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  20586078 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20586134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 20586626 - 20586570
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  20586626 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20586570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 24394253 - 24394309
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||  |||| |||||||    
T  24394253 gtttagtatgggaaagactaattttttccaccataggaaagttagtttttaaccatt 24394309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 26006152 - 26006208
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  26006152 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 26006208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 45000868 - 45000813
Alignment:
Q  79 tttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  45000868 tttagaatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 45000813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 25329950 - 25329908
Alignment:
Q  128 aaccatttgatttaagaggaacattgatcttatgatagtctct 170  Q
    ||||||| |||||||||||||||||||| |||| |||||||||    
T  25329950 aaccattagatttaagaggaacattgattttatcatagtctct 25329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 44021286 - 44021340
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgttttt 126  Q
    |||||||||||| ||||||||||   || |||||||||||||||||||| |||||    
T  44021286 ggtggggtttagcatgggaaagaaagttgtttcccaccatgggaaagtttttttt 44021340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 45297549 - 45297637
Alignment:
Q  72 ggtggggtttagtatgggaaagactattt-tttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttat 160  Q
    ||||||||||||||||||||||   | || ||||||| |||||||||||| ||||| ||||||| |||  |  |||||||||||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagtt-ttttttaaccattagatcaacaaggaacattgatcttat 45297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 5113750 - 5113694
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| | ||||||||||||||||||||  |||| |||||||    
T  5113750 gtttagcatgggaaagcctaatctttcccaccatgggaaagttagtttttaaccatt 5113694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 24394776 - 24394720
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||  |||| |||||||    
T  24394776 gtttagcatgggaaatgctaatttttcccaccatgggaaagttagtttttaaccatt 24394720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 42179154 - 42179194
Alignment:
Q  128 aaccatttgatttaagaggaacattgatcttatgatagtct 168  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  42179154 aaccattagatttaagaggaacattgattttatcatagtct 42179194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 43638070 - 43638030
Alignment:
Q  128 aaccatttgatttaagaggaacattgatcttatgatagtct 168  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  43638070 aaccattagatttaagaggaacattgattttatcatagtct 43638030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 45000321 - 45000377
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| |||||||||| |||||||||||  |||| |||||||    
T  45000321 gtttagcatgggaaaggctaatttttcccactatgggaaagttagtttttaaccatt 45000377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 359 - 433
Alignment:
Q  100 ttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcaca 175  Q
    |||||||||||| ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  359 ttttcccaccataggaaagtaggttttga-ccattagatttaagatgaacattgatcttatgatagtctcttcaca 433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 6182121 - 6182193
Alignment:
Q  100 ttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttca 173  Q
    |||| ||||||| ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  6182121 tttttccaccataggaaagtagattttga-ccattagatttaagatgaacattgatcttatgatagtctcttca 6182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 14360438 - 14360483
Alignment:
Q  208 aactatggtgtccagatttaacacaatactcacaacccaagtgaca 253  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  14360438 aactatgatgtccagatttaacacaatactcacaacccaagtgaca 14360483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 14360596 - 14360654
Alignment:
Q  370 tcattgtaaaagaaaatgatgaaacttgctttagctatggaaatcatgtttctatgata 428  Q
    ||||||||||| ||||  ||||||||||||| ||| ||||||||| |||||||||||||    
T  14360596 tcattgtaaaaaaaaactatgaaacttgcttcagccatggaaatcgtgtttctatgata 14360654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 6610085 - 6610024
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| ||||||| ||||    
T  6610085 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagatt 6610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 15562082 - 15562021
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatt 139  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| ||||||| ||||    
T  15562082 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagatt 15562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 7994061 - 7994117
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||  |||| |||||||    
T  7994061 gtttagtatgggaaaggctaatttttcccatcatgggaaagttagtttttaaccatt 7994117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 15561547 - 15561603
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||  |||| |||||||    
T  15561547 gtttagcatgggaaagactaatttttcccaccattggaaagttagtttttaaccatt 15561603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 16903939 - 16903883
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  16903939 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 16903883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30899396 - 30899452
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  30899396 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 30899452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 34617653 - 34617710
Alignment:
Q  72 ggtggggtttagtatgggaaagactattt-tttcccaccatgggaaagttgtttttga 128  Q
    |||||||||||| |||||||||  || || |||||||||||||||||||| |||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttga 34617710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 6609557 - 6609613
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||| ||||||  |||| |||||||    
T  6609557 gtttagcatgggaaaggctaatttttcccaccatggaaaagttagtttttaaccatt 6609613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 7994615 - 7994559
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||  |||| |||||||    
T  7994615 gtttagcatgggaaaggctaattttttccaccatgggaaagttagtttttaaccatt 7994559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 37996625 - 37996569
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||| ||||||||||||  |||| |||||||    
T  37996625 gtttagcatgggaaaggctaatttttcccatcatgggaaagttagtttttaaccatt 37996569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 7635677 - 7635621
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||||||||||||||||||||  |||| |||||||    
T  7635677 gtttagcatgggaaagactaatttttcccaccatgggaaagttagtttttaaccatt 7635621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 7635130 - 7635186
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  7635130 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 7635186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 18290537 - 18290481
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  18290537 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 18290481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 24126002 - 24126077
Alignment:
Q  101 tttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 177  Q
    |||||||||||||||||||| ||||  | ||||| ||||||||||||||||| || |||| ||||||| | ||||||    
T  24126002 tttcccaccatgggaaagttattttc-agccattagatttaagaggaacattaattttattatagtctatccacact 24126077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 25067898 - 25067842
Alignment:
Q  72 ggtggggtttagtatgggaaagactattt-tttcccaccatgggaaagttgtttttg 127  Q
    |||||||||||| |||||||||  ||||| ||||||||||| |||||||||||||||    
T  25067898 ggtggggtttagcatgggaaaggatatttgtttcccaccataggaaagttgtttttg 25067842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 930923 - 930969
Alignment:
Q  72 ggtggggtttagtatgggaaagacta-ttttttcccaccatgggaaa 117  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||||    
T  930923 ggtggggtttaatttgggaaagactagttttttcccaccatgggaaa 930969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 18290221 - 18290277
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||  |||| |||||||    
T  18290221 gtttagcatgggaaaagctaatttttcccaccatgggaaagttaatttttaaccatt 18290277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 18605901 - 18605845
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||  |||| |||||||    
T  18605901 gtttagcatgggaaaggctaattttttccaccatgggaaagtttgtttttaaccatt 18605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 17151002 - 17151090
Alignment:
Q  72 ggtggggtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttat 160  Q
    |||| ||||||| ||||||||| ||  |||||||||||||||||||||| |||||  |||| | |||| |||||| ||| |||||||||    
T  17151002 ggtgaggtttagcatgggaaaggctggtttttcccaccatgggaaagttattttttgaccactagattaaagaggtacactgatcttat 17151090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 38468912 - 38468968
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  38468912 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 38468968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 43755855 - 43755911
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  43755855 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 43755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 43756389 - 43756333
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||  |||| |||||||    
T  43756389 gtttagcatgggaaagactaattttttccaccatgggaaagttagtttttaaccatt 43756333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 38328928 - 38328886
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagtt 120  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||    
T  38328928 gtttagcatgggaaagactaatttttcccatcatgggaaagtt 38328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 32537658 - 32537707
Alignment:
Q  85 atgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  32537658 atgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 32537707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 28371753 - 28371694
Alignment:
Q  70 ttggtggggtttagtatgggaaagacta-ttttttcccaccatgggaaagtt-gtttttga 128  Q
    |||||| ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  28371753 ttggtgaggtttagcatgggaaag-ctacttttttcccaccatgggaaagttagtttttga 28371694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 32538544 - 32538488
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||| ||||||  |||| |||||||    
T  32538544 gtttagcatgggaaaggctaatttttcccaccatggaaaagttagtttttaaccatt 32538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 38469327 - 38469271
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||  |||| |||||||    
T  38469327 gtttagcatgggaaaggctaattttttccaccatgggaaagttagtttttaaccatt 38469271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 41707415 - 41707370
Alignment:
Q  123 ttttgaaccatttgatttaagaggaacattgatcttatgatagtct 168  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||    
T  41707415 tttttaaccatttgatttaagaggaacattaatcttataatagtct 41707370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30846022 - 30846078
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||  |||| |||||||    
T  30846022 gtttagcatgggaaagactaatttttcccaccataggaaagttagtttttaaccatt 30846078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 4139 - 4195
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||  |||| |||||||    
T  4139 gtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 17366 - 17406
Alignment:
Q  98 ttttttcccaccatgggaaagttgtttttgaaccatttgat 138  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  17366 ttttttcccaccatgggaaagttagtttttaaccatttgat 17406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 42493 - 42565
Alignment:
Q  79 tttagtatgggaaagacta-ttttttcccaccatgggaaagttgtttttgaaccatttgatttaagaggaaca 150  Q
    ||||| ||||||||| ||| |||||| |||||||||||||||||  ||| ||||||| |||| || |||||||    
T  42493 tttagcatgggaaaggctagtttttttccaccatgggaaagttgggtttaaaccattagattaaataggaaca 42565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 202325 - 202269
Alignment:
Q  78 gtttagtatgggaaagactattttttcccaccatgggaaagttgtttttgaaccatt 134  Q
    ||||||||| |||||| ||| ||||||||||||||| ||||||  |||| |||||||    
T  202325 gtttagtataggaaaggctaatttttcccaccatggaaaagttagtttttaaccatt 202269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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