View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12022_high_4 (Length: 251)

Name: NF12022_high_4
Description: NF12022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12022_high_4
NF12022_high_4
[»] chr1 (1 HSPs)
chr1 (1-237)||(34055432-34055668)
[»] chr3 (7 HSPs)
chr3 (73-173)||(47381252-47381351)
chr3 (73-169)||(47816721-47816816)
chr3 (75-155)||(45113354-45113434)
chr3 (13-77)||(47381702-47381766)
chr3 (171-227)||(47381173-47381229)
chr3 (13-77)||(47817195-47817259)
chr3 (171-233)||(47816634-47816694)
[»] chr8 (1 HSPs)
chr8 (75-173)||(40243962-40244059)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34055432 - 34055668
Alignment:
Q  1 acgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttaactgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34055432 acgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttcactgg 34055531  T
Q  101 ctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctatttacttaagagatggaatttgtggcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34055532 ctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagtgttgtggctcctatttacttaagagatggaatttgtggcaa 34055631  T
Q  201 gttcagcatatgcaaaaccatatatatgtcttcgttc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  34055632 gttcagcatatgcaaaaccatatatatgtcttcgttc 34055668  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
Q  73 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta 172  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47381351 tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta 47381253  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
Q  73 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc 169  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  47816816 tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc 47816721  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
Q  75 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc 155  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||    
T  45113434 acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc 45113354  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 47381766 - 47381702
Alignment:
Q  13 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 77  Q
    |||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||||||||    
T  47381766 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca 47381702  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
Q  171 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 227  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||    
T  47381229 tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat 47381173  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
Q  13 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 77  Q
    |||||||||||||||||| ||||||||||||||||   ||||| ||| |||||||||||||||||    
T  47817259 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca 47817195  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
Q  171 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc 233  Q
    |||||||||||||||||||| |||||||||| | |||||||  | | ||||||||||||||||    
T  47816694 tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc 47816634  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
Q  75 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat 173  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40244059 acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat 40243962  T

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