View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12022_low_4 (Length: 251)
Name: NF12022_low_4
Description: NF12022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12022_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34055432 - 34055668
Alignment:
| Q |
1 |
acgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttaactgg |
100 |
Q |
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| T |
34055432 |
acgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttcactgg |
34055531 |
T |
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| Q |
101 |
ctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctatttacttaagagatggaatttgtggcaa |
200 |
Q |
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| T |
34055532 |
ctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagtgttgtggctcctatttacttaagagatggaatttgtggcaa |
34055631 |
T |
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| Q |
201 |
gttcagcatatgcaaaaccatatatatgtcttcgttc |
237 |
Q |
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| T |
34055632 |
gttcagcatatgcaaaaccatatatatgtcttcgttc |
34055668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
| Q |
73 |
tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta |
172 |
Q |
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| T |
47381351 |
tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta |
47381253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
| Q |
73 |
tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc |
169 |
Q |
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| T |
47816816 |
tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc |
47816721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
| Q |
75 |
acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc |
155 |
Q |
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| T |
45113434 |
acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc |
45113354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 47381766 - 47381702
Alignment:
| Q |
13 |
ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca |
77 |
Q |
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| T |
47381766 |
ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca |
47381702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
| Q |
171 |
tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat |
227 |
Q |
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| T |
47381229 |
tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat |
47381173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
| Q |
13 |
ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca |
77 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
47817259 |
ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca |
47817195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
| Q |
171 |
tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc |
233 |
Q |
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|||||||||||||||||||| |||||||||| | ||||||| | | |||||||||||||||| |
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| T |
47816694 |
tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc |
47816634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
| Q |
75 |
acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat |
173 |
Q |
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| T |
40244059 |
acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat |
40243962 |
T |
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