View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12022_low_5 (Length: 235)
Name: NF12022_low_5
Description: NF12022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12022_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34055357 - 34055133
Alignment:
| Q |
1 |
ttctcgagttcaacttcaacaggcacgtgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattctatgatttggctt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055357 |
ttctcgagttcaacttcaacaggcacatgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattctatgatttggctt |
34055258 |
T |
|
| Q |
101 |
gacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactgactgaggcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34055257 |
gacatgagtgaatttatggaacgaagcacagtctccaaactcatcggctcacttcatgcatatgctggttataccaagggtggtcaactgactgaggaag |
34055158 |
T |
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| Q |
201 |
tttggcgccgtccctacactgttgt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
34055157 |
tttggcgccgtccctacactgttgt |
34055133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 47382691 - 47382827
Alignment:
| Q |
89 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
188 |
Q |
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|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||| ||||||||||| |
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| T |
47382691 |
atgattcggcttgacatgagcgaatttatggaacggcacacagtctccaaactcatcggttcacctcctggatatgttggttataccgagggtggtcaat |
47382790 |
T |
|
| Q |
189 |
tgactgaggcagtttggcgccgtccctacactgttgt |
225 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
47382791 |
tgactgaggcagttcggcgccgtccctatactgttgt |
47382827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 45115640 - 45115776
Alignment:
| Q |
89 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
188 |
Q |
| |
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|||||| | |||||||||||||| ||||||||| | ||| ||||||||||| || ||||||| || || ||||| |||||| ||| | |||||||| |
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| T |
45115640 |
atgattcgtcttgacatgagtgagtttatggaaaggcacactgtctccaaacttattggttcacctcctggatatgttggttacaccgaaggtggtcagt |
45115739 |
T |
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| Q |
189 |
tgactgaggcagtttggcgccgtccctacactgttgt |
225 |
Q |
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||||||| |||||| | || ||||| ||||||||||| |
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| T |
45115740 |
tgactgaagcagttcgtcgtcgtccttacactgttgt |
45115776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 40245405 - 40245541
Alignment:
| Q |
89 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
188 |
Q |
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|||||| | ||||||||||||||||| |||||| | |||||||||||||||||| ||||||| || | ||||| ||||||||| |||||||||||| |
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| T |
40245405 |
atgattcgtcttgacatgagtgaattcatggaaaggcacacagtctccaaactcattggttcacctccaggatatgttggttatactgagggtggtcaac |
40245504 |
T |
|
| Q |
189 |
tgactgaggcagtttggcgccgtccctacactgttgt |
225 |
Q |
| |
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|||||||||||||| |||| ||||||||||| ||||| |
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| T |
40245505 |
tgactgaggcagttcggcgtcgtccctacacggttgt |
40245541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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