View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_101 (Length: 229)
Name: NF12023_high_101
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_101 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 31187379 - 31187601
Alignment:
| Q |
7 |
tttacaatatcattttagtacaaattttgtgtgtgttatattgattattagaaacattataactaggaacatcatacaccttattgggagaaatgaatgt |
106 |
Q |
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| T |
31187379 |
tttacaatatcattttagtacaaattttgtgtgtgttatattgattattagaaacattataactaggaacatcatacaccttattgggagaaatgaatgt |
31187478 |
T |
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| Q |
107 |
tatttgctacatttatcacaatcattctccaattgatatttgctgaaagtagaataagaaattcaacacttgtatattttttgattaggaaatacatata |
206 |
Q |
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| T |
31187479 |
tatttgctacatttatcacaatcattctccaattgatatttgctgaaagtagaataagaaattcaacacttgtatattttttcattaggaaatacatata |
31187578 |
T |
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| Q |
207 |
ttaaggacgacgagtaataggaa |
229 |
Q |
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| T |
31187579 |
ttaaggacgacgagtaataggaa |
31187601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 31177319 - 31177538
Alignment:
| Q |
6 |
atttacaatatcattttagtacaaattttgtgtgtgttatattgattattagaaacattataactaggaacatcatacaccttattgggagaaatgaatg |
105 |
Q |
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| T |
31177319 |
atttacaataacattttagtacaaattttgtgtgt--tatattgattatttgaaacattat---taggaacatcatacaacatattgggagaaatgaatg |
31177413 |
T |
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| Q |
106 |
ttatttgctacatttatcacaatcattctccaattgatatttgctgaaagtagaataagaaattcaacacttgtata-ttttttgattaggaaatacata |
204 |
Q |
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| T |
31177414 |
ttatttgctacatttattacaatcattctccaattgatatttgctgaaagtagattaagaaattcaacacttctatattttttttattaggaaatacata |
31177513 |
T |
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| Q |
205 |
tattaaggacgacgagtaataggaa |
229 |
Q |
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| T |
31177514 |
tattaaagacgacgagttataggaa |
31177538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 31226319 - 31226177
Alignment:
| Q |
80 |
atacaccttattgggagaaatgaatgttatttgctacatttatcacaatcattctccaattgatatttgctgaaagtagaataagaaattcaacacttgt |
179 |
Q |
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| T |
31226319 |
atacaccttattgggagaaatgaatggtatttgctccatttatcacaatcattctccaattg-------ctgaaagtagaataagaaattcaacacttgt |
31226227 |
T |
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| Q |
180 |
atattttttgattaggaaatacatatattaaggacgacgagtaataggaa |
229 |
Q |
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| T |
31226226 |
aaattttttacttaggaaatacacatattaaggacgacgagtgataggaa |
31226177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 41367573 - 41367522
Alignment:
| Q |
87 |
ttattgggagaaatgaatgttatttgctacatttatcacaatcattctccaa |
138 |
Q |
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| T |
41367573 |
ttattgggagatatgaatcttatttgctacttttatcaaaaccattctccaa |
41367522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 17248255 - 17248315
Alignment:
| Q |
72 |
ggaacatcatacaccttattgggagaaatgaatgttatttgctacatttatcacaatcatt |
132 |
Q |
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| T |
17248255 |
ggaatatcatacaccttctttgaagaaaggaatgttatttgctacttttatcacaatcatt |
17248315 |
T |
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