View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_109 (Length: 219)
Name: NF12023_high_109
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_109 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 9233610 - 9233800
Alignment:
| Q |
15 |
caaaggaaagctaagaagtgggcccaatgttgcgataaagatgttgacaaaatcaaatgttaataatggacaagattttatcaacgaagttgcgaccatt |
114 |
Q |
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| T |
9233610 |
caaaggaaagctaagaagtgggcccgatgttgcgataaagatgttgacaaaatcaaatgttaataatggacaagattttatcaacgaagttgcgaccatt |
9233709 |
T |
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| Q |
115 |
ggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtgcacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
9233710 |
ggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtgcacttgtttacgaattcatgccaaatg |
9233800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 9384784 - 9384594
Alignment:
| Q |
15 |
caaaggaaagctaagaagtgggcccaatgttgcgataaagatgttgacaaaatcaaatgttaataatggacaagattttatcaacgaagttgcgaccatt |
114 |
Q |
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| T |
9384784 |
caaaggaaagctaagaagtggaccggatgttgcaattaagatgttgacaaaatccaatgttaataatggacaagattttattaacgaagttgcgaccatt |
9384685 |
T |
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| Q |
115 |
ggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtgcacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
9384684 |
ggaagaatacatcatgttaatgtagttcgtcttgttggatactgtgttgaagggaaaaagagtgcattggtttacgagttcatgccaaatg |
9384594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 8921191 - 8921065
Alignment:
| Q |
79 |
aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtg |
178 |
Q |
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| T |
8921191 |
aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg |
8921092 |
T |
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| Q |
179 |
cacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
8921091 |
ctcttgtttatgatttcatgccaaatg |
8921065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 9320398 - 9320278
Alignment:
| Q |
78 |
taatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagt |
177 |
Q |
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| T |
9320398 |
taatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggttcgacttattgggttttgtgttgaaggatcaaagcgt |
9320299 |
T |
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| Q |
178 |
gcacttgtttacgaattcatg |
198 |
Q |
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| T |
9320298 |
gctcttgtttatgaattcatg |
9320278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 8942512 - 8942386
Alignment:
| Q |
79 |
aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtg |
178 |
Q |
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| T |
8942512 |
aatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatcaaaaagag |
8942413 |
T |
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| Q |
179 |
cacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
8942412 |
ctcttgtttatgatttcatgcccaatg |
8942386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 9142485 - 9142547
Alignment:
| Q |
78 |
taatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggt |
140 |
Q |
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| T |
9142485 |
taatgggcaagattttattagtgaagttatgaccatcggaagaatacatcatgtgaatgtggt |
9142547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 15926811 - 15926937
Alignment:
| Q |
79 |
aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtg |
178 |
Q |
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| T |
15926811 |
aatggacaagattttattaatgaagtggcaaccataggaagaatacatcacaccaatgtagttcgacttattggattttgtgttgagggatcaaagcgtg |
15926910 |
T |
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| Q |
179 |
cacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
15926911 |
ctcttgtttatgaattcatgcccaatg |
15926937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 27692921 - 27692795
Alignment:
| Q |
79 |
aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggtacgtcttgttggatactgtgttgaaggaaaaaagagtg |
178 |
Q |
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| T |
27692921 |
aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtgcaactggttggattctgtgctgaaagaacaaagcaag |
27692822 |
T |
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| Q |
179 |
cacttgtttacgaattcatgccaaatg |
205 |
Q |
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| T |
27692821 |
ctctggtttacgagttcatgcctaatg |
27692795 |
T |
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