View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_110 (Length: 211)
Name: NF12023_high_110
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_110 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 48155270 - 48155458
Alignment:
| Q |
1 |
attctatttttataaacaaaatgaaaatggaaaatggaaggaaatcatagtgcttgctcacatcgcgtaggcacatacttttcttggtagcagaaataaa |
100 |
Q |
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| T |
48155270 |
attctatttttataaacaaaatgaaaatggaaaatggaaggaaatcatagtgcttgctcacatcgcgtaggcacatacttttcttggtagcagaaataaa |
48155369 |
T |
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| Q |
101 |
ttttagttgagttttaatttgctccaaaaattaatcacgattaaggcaaatctcaaaaactcaaacagagtttacaaatatatttacatatata |
194 |
Q |
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| T |
48155370 |
tattagttgagt-----tttgctccaaaaattaatcacgattaaggcaaatctcaaaaactcaaacagagtttacaaatatatttacatatata |
48155458 |
T |
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