View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_13 (Length: 516)
Name: NF12023_high_13
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Complemental strand, 18512404 - 18511951
Alignment:
| Q |
6 |
agaagcataggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataact |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18512404 |
agaagcagaggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataact |
18512305 |
T |
|
| Q |
106 |
gcttaaaaattgtacaggtaatgaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18512304 |
acttaaaaattgtacaggtaatgaacatgtttgaattgcaaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaac |
18512205 |
T |
|
| Q |
206 |
aattatataagttatattatatggattttttagccttttaattaactttgttactttggtnnnnnnnntaaattaactttgttactttggaccaagcagg |
305 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
18512204 |
aattatataagttatattatatggattttttagtcttttaattaactttgttactttggtaaaaaaaataaattaactttgttactttggaccaagca-g |
18512106 |
T |
|
| Q |
306 |
gatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatg |
405 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18512105 |
gatcacgataagcttaagcaactgcatatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatg |
18512006 |
T |
|
| Q |
406 |
ctagcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcctgta |
460 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18512005 |
ctagcttgtgttgatctagcactgaagcaaactgtgccctgctgtttgtcctgta |
18511951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 1984818 - 1984785
Alignment:
| Q |
81 |
ccatgtcatattatgtataataactgcttaaaaa |
114 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
1984818 |
ccatgtcatattatgtgtaataactgcttaaaaa |
1984785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 14517092 - 14517348
Alignment:
| Q |
6 |
agaagcataggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataact |
105 |
Q |
| |
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||||||| ||| ||||||||| |||||||||||| ||||| ||||||| ||||||||| |||| || || ||||||||||||||||||| | |||||||| |
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| T |
14517092 |
agaagcaaaggtgtataggttctcaatgtttgagcccacaatagcaaaagaaagcacaggtaacgatctttttaaccatgtcatattatatgtaataact |
14517191 |
T |
|
| Q |
106 |
gcttaaaaattgtacaggtaatgaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaac |
205 |
Q |
| |
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|||||||| ||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
14517192 |
atttaaaaatagtagaggtgatgaacatgtttgaattccaaaatcacttttaaataaggtattaggtagttttgtttagagttttgatcaagttttcaac |
14517291 |
T |
|
| Q |
206 |
aattatataagttatattatatggattttttagccttttaattaactttgttactttgg |
264 |
Q |
| |
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||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
14517292 |
tattgtat--gttatattatatgggttttttggccttttaattaactttgttactttgg |
14517348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 276 - 457
Target Start/End: Original strand, 14517329 - 14517509
Alignment:
| Q |
276 |
aattaactttgttactttggaccaagcagggatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctc |
375 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||| || ||||||| |||||||||||||| |
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| T |
14517329 |
aattaactttgttactttggaccaagcagg-atcaccataagctgaagcaactacgtacttcatctgattctcctagcaagcaaggcactgatcatgctc |
14517427 |
T |
|
| Q |
376 |
atacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcct |
457 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||| ||| |||| |
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| T |
14517428 |
atacatagaggtcctcgtgaattgttaatggtagcttgttttgatctagcactgaagcagactgttccctgctatttatcct |
14517509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 14522078 - 14522179
Alignment:
| Q |
6 |
agaagcataggcgtataggttttc-aatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataac |
104 |
Q |
| |
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||||||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14522078 |
agaagcagaggtgtataggttttccaatgtttgagcccacaatagcaaaagaaagcaaatgtaatgaactgtttaaccatgtcatattatgtgtaataac |
14522177 |
T |
|
| Q |
105 |
tg |
106 |
Q |
| |
|
|| |
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|
| T |
14522178 |
tg |
14522179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 6953466 - 6953392
Alignment:
| Q |
365 |
tgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctg |
439 |
Q |
| |
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|||||| |||||||||||||||||||| | |||||||||||||| ||||| | |||| |||| ||||||| |||| |
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| T |
6953466 |
tgatcaagctcatacaaagaggtcctcatcaattgttaatgctaccttgtttagatcaagcaatgaagcaggctg |
6953392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 414
Target Start/End: Complemental strand, 6920380 - 6920247
Alignment:
| Q |
280 |
aactttgttacttt-ggaccaagcagggatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaa-gacactgatcatgctcat |
377 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||||||||||| || || || || ||||| | |||||| ||||||| | ||||||||||||||| |
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| T |
6920380 |
aactttgttacttttggaccatgcagg-atcaccataagctaaagaaattgtgtttt--atctgctcctcccaataagcaaaggaactgatcatgctcat |
6920284 |
T |
|
| Q |
378 |
acaaagaggtcctcgtgaattgttaatgctagcttgt |
414 |
Q |
| |
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|||||||||| ||| | || ||||||||||| ||||| |
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| T |
6920283 |
acaaagaggttctcatcaactgttaatgctaccttgt |
6920247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 6944500 - 6944430
Alignment:
| Q |
364 |
ctgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagca |
434 |
Q |
| |
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||||||||||||||| |||||||||||| | || ||||||| ||| ||||| ||||| |||| ||||||| |
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|
| T |
6944500 |
ctgatcatgctcatataaagaggtcctcatcaactgttaattctaccttgttttgatgaagcaatgaagca |
6944430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 6944608 - 6944572
Alignment:
| Q |
226 |
atggattttttagccttttaattaactttgttacttt |
262 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||| |
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| T |
6944608 |
atggtttttttagccttttaatcaactttgttacttt |
6944572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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