View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_16 (Length: 497)
Name: NF12023_high_16
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 24605200 - 24604737
Alignment:
| Q |
16 |
agcagagacaaaacacatacatgcccattatggcttcttgtctcgatttcaaatttcaaaaataaattcgatggtcttttttacttttgttacatgcaca |
115 |
Q |
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| T |
24605200 |
agcagagacaaaacacatacatgcccattatggcttcttgtctcgatttcaaatttcaaaaataaattcgatggtcttttttacttttgttacatgcaca |
24605101 |
T |
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| Q |
116 |
caatgaaaagttcatttactagagtgtgtgaataaaaagactagtgtaggttggaattcgtgaaagatgtttatatttagtgtctaacggtccttcgaat |
215 |
Q |
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| T |
24605100 |
caatgaaaagttcatttactagattgtgtgaagaaaaagactggtgtaggttggaattcgtgaaagatgtctatatttagtgtctaacagtccttcgaat |
24605001 |
T |
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| Q |
216 |
aagattatttaaggtggagagaatctatg-nnnnnnnnnnnnnnnnnntaaattaagtttgcgaatatgtttggatgataatattttatgaggcagtgta |
314 |
Q |
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| T |
24605000 |
aagattatttatggtggagagaatatgtgaaaaaattcaaaaaaaaattaaattaagtttgcgaatatgtttggatgataaaattttatgaggcagtgta |
24604901 |
T |
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| Q |
315 |
attttagaaagtaattcaactctattgtttatatcataaattggaagaatttttaaaactatgatattttatgaagtattttgttaaagaagtccccaag |
414 |
Q |
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| T |
24604900 |
attttagaaaataattcaactctattgtttatattagaaattggaagaatttttaaaacgatgatattttatgaagtattttgttaaagaagtccccaag |
24604801 |
T |
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| Q |
415 |
aatttgataggaacatgcattgaaatatgcatggttggttgaattttagattttctgattattc |
478 |
Q |
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| T |
24604800 |
agtatgttaggaacatgcattgaaatatgcatggccgttcgaattttagattttctaattattc |
24604737 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 47108371 - 47108417
Alignment:
| Q |
353 |
aattggaagaatttttaaaactatgatattttatgaagtattttgtt |
399 |
Q |
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|||| |||||||||||||||| |||| | |||||||||||||||||| |
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| T |
47108371 |
aatttgaagaatttttaaaacgatgaaaatttatgaagtattttgtt |
47108417 |
T |
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