View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_high_3 (Length: 721)

Name: NF12023_high_3
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_high_3
NF12023_high_3
[»] chr2 (19 HSPs)
chr2 (19-437)||(12257855-12258276)
chr2 (30-175)||(12235173-12235317)
chr2 (241-437)||(7543242-7543438)
chr2 (245-452)||(14705432-14705639)
chr2 (244-440)||(12244341-12244537)
chr2 (19-149)||(7542699-7542829)
chr2 (243-404)||(12000300-12000461)
chr2 (241-441)||(12235763-12235963)
chr2 (19-146)||(11999867-11999994)
chr2 (29-146)||(16657085-16657202)
chr2 (19-140)||(16661566-16661687)
chr2 (23-146)||(12244974-12245097)
chr2 (19-145)||(14703881-14704007)
chr2 (245-374)||(16656604-16656733)
chr2 (60-146)||(43625924-43626010)
chr2 (248-379)||(16661065-16661196)
chr2 (244-445)||(43626288-43626489)
chr2 (400-455)||(12000786-12000841)
chr2 (103-146)||(39373417-39373460)
[»] chr7 (45 HSPs)
chr7 (21-146)||(13333024-13333149)
chr7 (19-139)||(10493949-10494069)
chr7 (19-146)||(8585274-8585401)
chr7 (19-147)||(8667892-8668020)
chr7 (245-467)||(27829256-27829478)
chr7 (243-437)||(17261359-17261553)
chr7 (31-147)||(6789997-6790113)
chr7 (244-379)||(3148339-3148474)
chr7 (244-461)||(6790378-6790595)
chr7 (19-139)||(8654923-8655043)
chr7 (19-140)||(8629005-8629126)
chr7 (38-146)||(1301956-1302064)
chr7 (280-368)||(7876844-7876932)
chr7 (277-437)||(8582664-8582824)
chr7 (19-127)||(8671217-8671325)
chr7 (280-459)||(8660248-8660427)
chr7 (244-379)||(8668433-8668568)
chr7 (277-437)||(8572591-8572751)
chr7 (21-139)||(3147747-3147865)
chr7 (245-379)||(13332149-13332283)
chr7 (286-375)||(8635502-8635591)
chr7 (280-468)||(1302315-1302503)
chr7 (280-371)||(8546679-8546770)
chr7 (244-379)||(8647669-8647804)
chr7 (240-374)||(8591362-8591496)
chr7 (245-379)||(8630197-8630331)
chr7 (30-140)||(8659847-8659957)
chr7 (243-437)||(17269067-17269261)
chr7 (277-342)||(8568839-8568904)
chr7 (31-140)||(17268424-17268533)
chr7 (245-379)||(8584535-8584669)
chr7 (245-379)||(10493000-10493134)
chr7 (31-140)||(17260726-17260835)
chr7 (277-437)||(8538805-8538965)
chr7 (38-150)||(8582192-8582304)
chr7 (244-379)||(8655317-8655452)
chr7 (60-139)||(27830450-27830529)
chr7 (280-374)||(8602738-8602832)
chr7 (60-146)||(8647388-8647474)
chr7 (38-146)||(8546124-8546232)
chr7 (277-365)||(8577290-8577378)
chr7 (103-150)||(8570868-8570915)
chr7 (277-375)||(8610665-8610763)
chr7 (280-377)||(8104069-8104166)
chr7 (113-150)||(8559900-8559937)
[»] chr4 (8 HSPs)
chr4 (236-437)||(35133414-35133615)
chr4 (19-147)||(35132919-35133047)
chr4 (23-147)||(9335458-9335582)
chr4 (244-379)||(9323063-9323198)
chr4 (244-379)||(9377542-9377677)
chr4 (244-379)||(9335035-9335169)
chr4 (244-355)||(30776085-30776196)
chr4 (21-146)||(30775727-30775852)
[»] chr1 (7 HSPs)
chr1 (241-468)||(34465158-34465385)
chr1 (244-459)||(4677459-4677674)
chr1 (277-379)||(15596060-15596162)
chr1 (51-136)||(52549098-52549183)
chr1 (30-147)||(15595523-15595638)
chr1 (19-146)||(4678126-4678253)
chr1 (20-145)||(34466362-34466487)
[»] chr5 (4 HSPs)
chr5 (245-379)||(42554186-42554320)
chr5 (60-146)||(28220465-28220551)
chr5 (244-451)||(28220915-28221122)
chr5 (60-128)||(42555530-42555598)
[»] chr6 (2 HSPs)
chr6 (32-140)||(28911068-28911176)
chr6 (280-314)||(28911318-28911352)
[»] chr8 (4 HSPs)
chr8 (277-467)||(12529869-12530059)
chr8 (19-140)||(43745320-43745441)
chr8 (245-440)||(43745793-43745985)
chr8 (38-145)||(12528996-12529103)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 12258276 - 12257855
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    |||||| || |||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12258276 gtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcactaaacttccta 12258177  T
Q  119 ccaattaacctcttagcatctgcaaaaattaacatttgtaattctcaacattcaattattcagcacttcagc---attaatcatatcaaaaca---atat 212  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||  ||| |||||||||| ||||||||   ||||||||||  ||||||   |||     
T  12258176 ccaattaacctcttagcatctg-gaaatttaacatttgtaattctca--attaaattattcagtacttcagcattattaatcatagtaaaacaattataa 12258080  T
Q  213 taagtatataaaaggaagtgaaaa-atttaaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttg 311  Q
     |||||||| ||||||||| |||| | |  || ||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  12258079 caagtatat-aaaggaagtaaaaagaatagaaataccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttg 12257981  T
Q  312 atctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaa 411  Q
    ||||||||| ||||||||||||||||| ||| || |||| ||||| || ||||||||||||||| |||| |||| ||| |||||||| || || || ||     
T  12257980 atctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctcagctcgacaatattgttcctgccaaacagcaacgcat 12257881  T
Q  412 gagtatgttgtgccgaggtctattcc 437  Q
    || || |||||||| ||||| |||||    
T  12257880 gaatacgttgtgccaaggtcaattcc 12257855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 12235173 - 12235317
Alignment:
Q  30 taatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacct 129  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  12235173 taatcatgggtttgtcattgacaccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacct 12235272  T
Q  130 cttagcatctgcaaaaattaacatttgtaattctcaacattcaatt 175  Q
    ||||||||||| ||||||||||||| |||| | ||| |||||||||    
T  12235273 cttagcatctg-aaaaattaacattagtaactttcatcattcaatt 12235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 241 - 437
Target Start/End: Original strand, 7543242 - 7543438
Alignment:
Q  241 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 340  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||| |||  |||||| |||||||| |||| ||  |||||||||||| |||||||||    
T  7543242 aaattaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtg 7543341  T
Q  341 ttattttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
    || || ||||||||||||| ||||||||||| ||||||||  | ||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  7543342 ttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 245 - 452
Target Start/End: Original strand, 14705432 - 14705639
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    ||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||  |||| ||  |||||||||||| ||||||| ||| |    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaaca 444  Q
    | | |||||||| || ||||||||||| ||||||||  ||||||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||||||| ||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagca 14705631  T
Q  445 catccttc 452  Q
    ||||||||    
T  14705632 catccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 244 - 440
Target Start/End: Complemental strand, 12244537 - 12244341
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||||||||||||||| |||  |||| |||||||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||     
T  12244537 ttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttg 12244438  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccac 440  Q
    || ||||||| || || ||||||||||| ||||| ||  | ||||| |||||||| ||||| ||||| || || ||||| || ||||||||||||||    
T  12244437 ttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccac 12244341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7542699 - 7542829
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    |||||||||||||||||| ||| |||||||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||    
T  7542699 gtacttaacggtaatcatgggtctgtcattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttccta 7542798  T
Q  119 ccaattaacctcttagcatctgcaaaaatta 149  Q
    ||||||||||||||||||||| |||||||||    
T  7542799 ccaattaacctcttagcatctacaaaaatta 7542829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 243 - 404
Target Start/End: Original strand, 12000300 - 12000461
Alignment:
Q  243 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 342  Q
    ||||||||| ||||||||||||| |||| |||| ||||| || || |||||||||||||  |||||||||| || |||||||||||||||||||||||||    
T  12000300 attaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtt 12000399  T
Q  343 attttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgc 404  Q
    |||||||||||||| || ||||||||||| ||||||||  | ||||| ||| ||||||||||    
T  12000400 attttgttgccttgatcgttgtgaatgatttcaactcgagagtgttgttccagccacactgc 12000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 241 - 441
Target Start/End: Original strand, 12235763 - 12235963
Alignment:
Q  241 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 340  Q
    |||||||||||||| |||||||| ||||||  ||| ||||||||||| |||||||||||||||||||| |||| ||  |||||||||||| ||||||| |    
T  12235763 aaattaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaagggg 12235862  T
Q  341 ttattttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccac 440  Q
    || || | |||||||| || ||||||||||||||||||||  | || || |||||||| ||||| ||||| || |||||||| || |||||||| |||||    
T  12235863 ttgttctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccac 12235962  T
Q  441 a 441  Q
    |    
T  12235963 a 12235963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 11999867 - 11999994
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| |||| |  |||||||||||||||  ||||||||||||||| |    
T  11999867 gtacttaacagtaattattggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaa 11999966  T
Q  119 ccaattaacctcttagcatctgcaaaaa 146  Q
    |||||||||||||||||||||| |||||    
T  11999967 ccaattaacctcttagcatctgaaaaaa 11999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 16657202 - 16657085
Alignment:
Q  29 gtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacc 128  Q
    |||||||| ||||||||||| || || ||| ||||||||||||||||||| || ||||||| |||||||||  ||||||||||||||||||| |||||||    
T  16657202 gtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaacc 16657103  T
Q  129 tcttagcatctgcaaaaa 146  Q
    | |||||||||| |||||    
T  16657102 ttttagcatctgaaaaaa 16657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 16661687 - 16661566
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    |||||||||  ||||| ||||||||||||| ||||||||| | |||||||| |||||||||| |||||| | |||||||||  | |||||||| ||||||    
T  16661687 gtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttccta 16661588  T
Q  119 ccaattaacctcttagcatctg 140  Q
    ||||||||||||||||||||||    
T  16661587 ccaattaacctcttagcatctg 16661566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 12245097 - 12244974
Alignment:
Q  23 ttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaa 122  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||| ||||| || | |  ||||||  ||||||   |||||||||||||||||||||    
T  12245097 ttaacagtaattattggtttgtcattgacaccagcagtgaccttgaacggccataataatgcatcatccagaacaataggatcactaaacttcctaccaa 12244998  T
Q  123 ttaacctcttagcatctgcaaaaa 146  Q
    |||| ||||||||||||| |||||    
T  12244997 ttaatctcttagcatctgaaaaaa 12244974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 14703881 - 14704007
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| |||||||| |||||||||| ||| |||||||||||||| |||||||| || | |||||||||||||||||   |||| |||||||||||     
T  14703881 gtacttaaccgtaatcatgggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttgaacaataggatcgctaaacttcctt 14703980  T
Q  119 ccaattaacctcttagcatctgcaaaa 145  Q
    || |  |||||||||||||||| ||||    
T  14703981 cccaacaacctcttagcatctgaaaaa 14704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 16656733 - 16656604
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    |||||||||  |||||||| |||||  | ||  |||||||||| ||||||||||| |||||||||||||| | ||||||||||||| ||||||||||| |    
T  16656733 taccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 16656634  T
Q  345 tttgttgccttggtcattgtgaatgatctc 374  Q
    | |||| || ||||||||||| ||||||||    
T  16656633 tctgtttccctggtcattgtgtatgatctc 16656604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 43625924 - 43626010
Alignment:
Q  60 tgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatctgcaaaaa 146  Q
    ||||| |||||||||||||||| ||||||| |||||||||   |||||||||||||||||| ||||||||||||||||||| |||||    
T  43625924 tgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 379
Target Start/End: Complemental strand, 16661196 - 16661065
Alignment:
Q  248 caaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttatttt 347  Q
    ||||||| |||||||| ||||||| ||| ||||||| ||| |||||| |||| | |||||||||| | | ||| ||||||||| |||||||||| |||||    
T  16661196 caaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaatttt 16661097  T
Q  348 gttgccttggtcattgtgaatgatctcaactc 379  Q
    ||||||||  || ||||| || ||||||||||    
T  16661096 gttgccttcatcgttgtggataatctcaactc 16661065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 244 - 445
Target Start/End: Original strand, 43626288 - 43626489
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||||||||||||  |||| |   |  ||||||  ||| ||||||||||||||||||||||| || |||||||||| |||| ||||||||||      
T  43626288 ttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtag 43626387  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaac 443  Q
    || |||| |||||||||||||| || ||||| ||||  |  | ||  ||  ||||||| || | |||||| || ||||| || |||||||||||||||||    
T  43626388 ttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccacaac 43626487  T
Q  444 ac 445  Q
    ||    
T  43626488 ac 43626489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 12000786 - 12000841
Alignment:
Q  400 actgcgacacaagagtatgttgtgccgaggtctattcccacaacacatccttcata 455  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||  |||||||||    
T  12000786 actgcaacacaagagtatgttgtgccgaggtctactcccacagcaagtccttcata 12000841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  103 atcactaaacttcctaccaattaacctcttagcatctgcaaaaa 146  Q
    |||| ||||||||||||||||||||||||||||||||| |||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 13333149 - 13333024
Alignment:
Q  21 acttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctacc 120  Q
    ||||| ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  13333149 acttagcggtaatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctacc 13333050  T
Q  121 aattaacctcttagcatctgcaaaaa 146  Q
    |||||||||||||||||||| |||||    
T  13333049 aattaacctcttagcatctgaaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 10494069 - 10493949
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| | |||||||||  ||||||||||||||||     
T  10494069 gtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctg 10493970  T
Q  119 ccaattaacctcttagcatct 139  Q
    |||||||||||||||||||||    
T  10493969 ccaattaacctcttagcatct 10493949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 8585401 - 8585274
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| |||||||||||||||||||| |||||||   | |||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  8585401 gtacttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttccta 8585302  T
Q  119 ccaattaacctcttagcatctgcaaaaa 146  Q
    |||||||||||||| ||||||| |||||    
T  8585301 ccaattaacctcttggcatctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 8667892 - 8668020
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| |||||||||||||||||||| ||||||| | | ||||||||||||||||||| ||||||   |||||||||  | |||||||||||||||    
T  8667892 gtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttccta 8667991  T
Q  119 ccaattaacctcttagcatctgcaaaaat 147  Q
    |||||||||||||||||||||||||||||    
T  8667992 ccaattaacctcttagcatctgcaaaaat 8668020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 245 - 467
Target Start/End: Complemental strand, 27829478 - 27829256
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    ||||||||| ||||||||||||||||  ||| ||||| ||||| |||||||||||||||||||| || |  |  |||||||||||||||||||||||| |    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaaca 444  Q
     ||||||||||| ||||||||||| ||||| |||| |   ||||| ||||||||| |||| || || ||||| ||||| || ||||| |||||||||  |    
T  27829378 cttgttgccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtcaattcccacagaa 27829279  T
Q  445 catccttcatactttttagccat 467  Q
       |||||||||||||| |||||    
T  27829278 agcccttcatactttttcgccat 27829256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 243 - 437
Target Start/End: Original strand, 17261359 - 17261553
Alignment:
Q  243 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 342  Q
    |||||||||||| |||||||  ||||| |  || ||||||||||| || |||||||| |||||||||| ||||||||  ||||||||| ||||||| ||     
T  17261359 attaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagta 17261458  T
Q  343 attttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
    |||||||| ||||| ||||||||||||||||||||||  | |||||  || ||||| || || |||||||||||||| || || |||||||||||    
T  17261459 attttgtttccttgatcattgtgaatgatctcaactctaccatgttcttcatgccatacggcaacacaagagtatgtcgtcccaaggtctattcc 17261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 6789997 - 6790113
Alignment:
Q  31 aatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctc 130  Q
    |||||| || ||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||   ||||||||||||||||||||||||||||    
T  6789997 aatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctc 6790096  T
Q  131 ttagcatctgcaaaaat 147  Q
    |||||||||| ||||||    
T  6790097 ttagcatctgaaaaaat 6790113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 3148339 - 3148474
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||| |||||||||| ||||||    |  ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||| ||||||||||      
T  3148339 ttaccaaaaacagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 3148438  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3148439 ttttgttgccttggtcattgtgaataatctcaactc 3148474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 244 - 461
Target Start/End: Original strand, 6790378 - 6790595
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    ||||| |||| ||||||||| ||||||   || ||||||| ||| ||||||||||| ||||||||||| || |  |||||||||||| ||||||||||      
T  6790378 ttaccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtgg 6790477  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaac 443  Q
    ||||||| ||||||||||||||||| ||||||||||     ||||  ||  |||||||  | |||||||| |||||||| || ||||||||||||||| |    
T  6790478 ttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacagc 6790577  T
Q  444 acatccttcatacttttt 461  Q
    ||||||||| || |||||    
T  6790578 acatccttcgtatttttt 6790595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 8654923 - 8655043
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| |||||||| ||||||||||| ||||||| ||| ||| |||||||||||||||| ||||| | ||||||||   |||||||| ||||||||    
T  8654923 gtacttaacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttccta 8655022  T
Q  119 ccaattaacctcttagcatct 139  Q
    |||||||||||||||||||||    
T  8655023 ccaattaacctcttagcatct 8655043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 8629005 - 8629126
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| | ||||||||| |||||||| | ||||| | | |||||||||||||| ||||| ||||| | |||||||||  |||||||||||||||||    
T  8629005 gtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttccta 8629104  T
Q  119 ccaattaacctcttagcatctg 140  Q
    |||||||||||||| |||||||    
T  8629105 ccaattaacctcttggcatctg 8629126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 1301956 - 1302064
Alignment:
Q  38 ggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcat 137  Q
    ||||||||||| ||||| ||  |||||||||||||||||||||| || || | ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  1301956 ggtttgtcattcacaccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcat 1302055  T
Q  138 ctgcaaaaa 146  Q
    ||| |||||    
T  1302056 ctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 7876932 - 7876844
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaat 368  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| || |||||||||| |||||||||||    
T  7876932 tgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaat 7876844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 277 - 437
Target Start/End: Original strand, 8582664 - 8582824
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaa 376  Q
    |||||||| |||||||||||||||||||| ||||||   ||||| ||||||||||||||||||||| ||||||| ||||| |||||||| ||||| || |    
T  8582664 gcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttcca 8582763  T
Q  377 ctcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
    | ||    | |||||||||||||||| | ||||| ||||| ||||| || ||||| |||||    
T  8582764 cacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattcc 8582824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 8671325 - 8671217
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    |||||| || |||||||||||||||||||| ||||||| | | ||||||||||||||||||| ||||||   |||||||||  |||||||||||||||||    
T  8671325 gtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttccta 8671226  T
Q  119 ccaattaac 127  Q
    |||||||||    
T  8671225 ccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 280 - 459
Target Start/End: Original strand, 8660248 - 8660427
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaactc 379  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||||| | ||||||||| ||||||| |||||||| ||||  |||||||| ||||    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactc 8660347  T
Q  380 ggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaacacatccttcatacttt 459  Q
    |    || | |||| ||||||| || ||||| || || ||||| || ||||||||||| | | ||| |||||| ||||||    
T  8660348 gattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttcgtacttt 8660427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 8668433 - 8668568
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| |||||||| |||||||||||||| || ||  ||||||||||| ||||||||||||    
T  8668433 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgtta 8668532  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||  ||| ||||| ||||||||||| ||||||||||    
T  8668533 ttcggtttccttgatcattgtgaataatctcaactc 8668568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 437
Target Start/End: Original strand, 8572591 - 8572751
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaa 376  Q
    |||||||| |||||||||||||| ||||| ||||||   ||||| |||||||||||||| || ||| || |||| |||||||||||||| ||||| ||||    
T  8572591 gcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttcaa 8572690  T
Q  377 ctcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
    | ||   || |||||||||||||||| | ||||| ||||| || ||||| ||||| |||||    
T  8572691 cacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattcc 8572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 3147747 - 3147865
Alignment:
Q  21 acttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctacc 120  Q
    ||||||| | |||||| ||||||||||| || ||   | |||||||||||||||||||||| ||||||| |||||||||   ||||| ||||||||||||    
T  3147747 acttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctacc 3147846  T
Q  121 aattaacctcttagcatct 139  Q
    |||||||||||| ||||||    
T  3147847 aattaacctctttgcatct 3147865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 13332283 - 13332149
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    ||||||||| |||||||| ||||||    || | ||||||||||||||||||||||||||| |||||||| ||  ||||||||||| ||||||||||  |    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactc 379  Q
    | | || ||||| ||||||||||| ||||||||||    
T  13332183 tctatttccttgatcattgtgaataatctcaactc 13332149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 8635591 - 8635502
Alignment:
Q  286 ttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctca 375  Q
    ||||||||||||||||||||||||||  | | |||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||    
T  8635591 ttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgatctca 8635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 280 - 468
Target Start/End: Original strand, 1302315 - 1302503
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaactc 379  Q
    |||||||| ||||||||||| |||||||||||||| |  |||||||||||| |||| |||||| |||||||||||||||| ||||  |||||||| ||||    
T  1302315 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 1302414  T
Q  380 ggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaacacatccttcatactttttagccatg 468  Q
         || | |||| ||||||| || ||||| || || || || || ||||||||||| ||| ||| |||||| |||||| | ||||||    
T  1302415 tattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatg 1302503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 8546679 - 8546770
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgat 371  Q
    ||||| ||||||||||||||||||| ||||||    || |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  8546679 tgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 8546770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 8647669 - 8647804
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||||||||||   ||||||   ||| || ||||| || || ||||||||||||||||||||||| |  |||||||||||| ||||||||||      
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    || |||| ||||| ||||||||||| ||||||||||    
T  8647769 ttctgtttccttgatcattgtgaataatctcaactc 8647804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 8591362 - 8591496
Alignment:
Q  240 taaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggt 339  Q
    ||||||||| ||||||||||||   |||||   ||| || || || || |||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  8591362 taaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggt 8591461  T
Q  340 gttattttgttgccttggtcattgtgaatgatctc 374  Q
    || ||| | || ||||| ||||||||||| |||||    
T  8591462 gtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 245 - 379
Target Start/End: Original strand, 8630197 - 8630331
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    ||||||||||||||||||| |||||||  || || |||| ||| |||||| |||||| |||||||||||| |  || ||||||||  | |||||||| ||    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||| |||||||  ||||||||||| ||||||||||    
T  8630297 tttattgccttcatcattgtgaataatctcaactc 8630331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 8659847 - 8659957
Alignment:
Q  30 taatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacct 129  Q
    |||||||  ||||||| || ||||||||  | |||||||||||||||||||| || || | ||||||||||  |||||||||||||||||||||||| ||    
T  8659847 taatcatgagtttgtcgttcacaccagcgataaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatct 8659946  T
Q  130 cttagcatctg 140  Q
    ||| |||||||    
T  8659947 ctttgcatctg 8659957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 437
Target Start/End: Original strand, 17269067 - 17269261
Alignment:
Q  243 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 342  Q
    |||||||||||| |||||||  ||||| |  || ||||||||||| || | |||||| || ||||||| ||||||||  ||||||||| |||| || ||     
T  17269067 attaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagta 17269166  T
Q  343 attttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
     ||||||||||||| |||||||| || ||||||||||  |  ||||  || |||||||| || ||||| |||||||| || || |||||||||||    
T  17269167 gttttgttgccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc 17269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 8568839 - 8568904
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 342  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  8568839 gcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgtt 8568904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 17268424 - 17268533
Alignment:
Q  31 aatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctc 130  Q
    |||||| ||||||||||| | | | ||| ||||||||||||||||| |||||||||| | ||| || ||  ||||||||||||||||||||||||  |||    
T  17268424 aatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctc 17268523  T
Q  131 ttagcatctg 140  Q
    ||||||||||    
T  17268524 ttagcatctg 17268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 8584669 - 8584535
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    |||||||||||||||| |  ||||||| ||| || |||| ||| |||||| |||||| |||||||||||| |  || ||||||||| | |||||||| ||    
T  8584669 taccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgat 8584570  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||| |||||||  || |||||||| ||||||||||    
T  8584569 tttattgccttcatcgttgtgaataatctcaactc 8584535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 10493134 - 10493000
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    |||||||||| ||||||| ||||||    || | ||||||||| ||||||||||| |||||||||||||| ||  ||||||||||| ||||||||||  |    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactc 379  Q
    | | || ||||| ||||||||||| || |||||||    
T  10493034 tctatttccttgatcattgtgaataatttcaactc 10493000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 17260726 - 17260835
Alignment:
Q  31 aatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctc 130  Q
    |||||| ||||||||||| | | | ||| ||||||||||||||||| |||||||||| | ||| || ||  ||||||||||||||||||||| ||  |||    
T  17260726 aatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctc 17260825  T
Q  131 ttagcatctg 140  Q
    ||||||||||    
T  17260826 ttagcatctg 17260835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 277 - 437
Target Start/End: Original strand, 8538805 - 8538965
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaa 376  Q
    |||||||| |||||||||||||||||||| | ||||   ||| | ||| ||||||||||||||||  ||||||| ||||| || ||||| |||||||| |    
T  8538805 gcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcca 8538904  T
Q  377 ctcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcc 437  Q
    | ||    | |||||||||||||||| | ||||| ||||| || ||||| ||||| |||||    
T  8538905 cacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattcc 8538965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 8582192 - 8582304
Alignment:
Q  38 ggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcat 137  Q
    |||||||||||  |||| || ||||||||||| ||||||||| | ||||| | ||||||||    ||||||| | ||||| |||||||||||||| ||||    
T  8582192 ggtttgtcattagcacctgcggtgaccttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaacctctttgcat 8582291  T
Q  138 ctgcaaaaattaa 150  Q
    ||| |||||||||    
T  8582292 ctgaaaaaattaa 8582304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 8655317 - 8655452
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||| ||||||||||  ||||||  ||| | ||||||||  ||  |||  ||||||||||||||||  | |||||||||||||  |||||||||      
T  8655317 ttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtag 8655416  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    || | |||||||| ||||||||||| ||||||||||    
T  8655417 ttctattgccttgatcattgtgaataatctcaactc 8655452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 27830529 - 27830450
Alignment:
Q  60 tgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatct 139  Q
    |||| |||||| |||||||  ||||||| | ||||||||| | ||| || ||||||||||||||||||||||||||||||    
T  27830529 tgactttgaatagccacaagtttatatctttttgaacaacatcatcgctgaacttcctaccaattaacctcttagcatct 27830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 8602738 - 8602832
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctc 374  Q
    ||||| |||||||||||||| |||||||||| ||| | ||| ||||||||| ||||||| ||  || |||| ||||| ||||||||||| |||||    
T  8602738 tgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 8647388 - 8647474
Alignment:
Q  60 tgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatctgcaaaaa 146  Q
    |||||||||||||||||||| |  ||||||  ||||||||   ||||  |||||||||||| ||||||||||||||||||| |||||    
T  8647388 tgaccttgaatggccacaacttcttatcattctgaacaacagaatcaaaaaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 8546124 - 8546232
Alignment:
Q  38 ggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcat 137  Q
    ||||||||||| ||||| | | ||||||| || |||||||||| || |||||  |||||||    ||||||| | ||||| |||||||||||||| ||||    
T  8546124 ggtttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcat 8546223  T
Q  138 ctgcaaaaa 146  Q
    |||||||||    
T  8546224 ctgcaaaaa 8546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 8577290 - 8577378
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtg 365  Q
    |||||||| ||||||||||| |||||||| ||||||   || || ||||||||||||||||| ||  || |||| ||||| ||||||||    
T  8577290 gcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtg 8577378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 8570868 - 8570915
Alignment:
Q  103 atcactaaacttcctaccaattaacctcttagcatctgcaaaaattaa 150  Q
    ||||||| ||||||| ||||||||||||||  ||||||||||||||||    
T  8570868 atcactatacttccttccaattaacctctttacatctgcaaaaattaa 8570915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 8610665 - 8610763
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctca 375  Q
    |||||||| || ||||||||||| ||||||||||||||   || |||||||||| ||||||| ||  || |||| ||||| ||||| || || ||||||    
T  8610665 gcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctca 8610763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 8104069 - 8104166
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaac 377  Q
    |||||||| ||||||||||| |||||||||| |   | ||||||||||||| |||| |||||  || |||| ||||| |||||   ||||||||||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcattagcaatgatctcaac 8104166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 8559900 - 8559937
Alignment:
Q  113 ttcctaccaattaacctcttagcatctgcaaaaattaa 150  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  8559900 ttccttccaattaacctctttgcatctgcaaaaattaa 8559937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 236 - 437
Target Start/End: Original strand, 35133414 - 35133615
Alignment:
Q  236 aatttaaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaaga 335  Q
    |||| ||||||||||| |||||||||| |   ||| |||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  35133414 aattgaaattaccaaatacagtgttttcaaaattggcagcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaaga 35133513  T
Q  336 aggtgttattttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctatt 435  Q
    ||||||| ||||||||| ||| || ||||||||||| || |||||  | ||||| || ||||| ||||| ||||| || || ||||| ||||||||||||    
T  35133514 aggtgttgttttgttgctttgatcgttgtgaatgatttcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctatt 35133613  T
Q  436 cc 437  Q
    ||    
T  35133614 cc 35133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 35132919 - 35133047
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| | || |||||||||||||||||   |||||||||||||||||    
T  35132919 gtacttaaccgtaatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttccta 35133018  T
Q  119 ccaattaacctcttagcatctgcaaaaat 147  Q
    ||||||||||| |||||||||| ||||||    
T  35133019 ccaattaaccttttagcatctgaaaaaat 35133047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 9335582 - 9335458
Alignment:
Q  23 ttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaa 122  Q
    ||||| |||||||||||||||||||| ||||||| | | ||||||||||||||||||| ||||||   |||||||||  ||||||||||||||||||||     
T  9335582 ttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccag 9335483  T
Q  123 ttaacctcttagcatctgcaaaaat 147  Q
    |||| ||||||||||||||||||||    
T  9335482 ttaatctcttagcatctgcaaaaat 9335458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 9323198 - 9323063
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| ||||||||||||||||||||||| || ||  ||||||||||| |||||||||||     
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||  ||| ||||| ||||||||||| ||||||||||    
T  9323098 ttcggtttccttgatcattgtgaataatctcaactc 9323063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 9377677 - 9377542
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| ||||||||||||||||||||||| || ||  ||||||||||| |||||||||||     
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||  ||| ||||| ||||||||||| ||||||||||    
T  9377577 ttcggtttccttgatcattgtgaataatctcaactc 9377542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 9335169 - 9335035
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| |||||||||||| |||||||||| || ||  ||||||||||| |||||||||||     
T  9335169 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9335071  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactc 379  Q
    ||  ||| ||||| ||||||||||| ||||||||||    
T  9335070 ttcggtttccttgatcattgtgaataatctcaactc 9335035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 355
Target Start/End: Original strand, 30776085 - 30776196
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    |||||||||||||||||||||||||||| ||| || || | ||| |||||| |||| | |||||||||| | | ||||||||||||| |||||||||| |    
T  30776085 ttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtga 30776184  T
Q  344 ttttgttgcctt 355  Q
    ||||| ||||||    
T  30776185 ttttgctgcctt 30776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 30775727 - 30775852
Alignment:
Q  21 acttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctacc 120  Q
    |||||| || |||||| ||||||||||| ||||||| |   |||||||||||||||||||  ||||| | |||||||||  | || ||||| ||||||||    
T  30775727 acttaagggaaatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctacc 30775826  T
Q  121 aattaacctcttagcatctgcaaaaa 146  Q
    ||||||||| |||||||||| |||||    
T  30775827 aattaaccttttagcatctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 241 - 468
Target Start/End: Complemental strand, 34465385 - 34465158
Alignment:
Q  241 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 340  Q
    ||||||||||| |||||||| || ||||||  ||| | ||||||||| ||||||| ||| ||||| |||||||| | ||| ||||||||| |||||||||    
T  34465385 aaattaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtg 34465286  T
Q  341 ttattttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccac 440  Q
    |  || |||| ||||||||||||| ||| ||||| ||||  |  ||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||||||    
T  34465285 tggttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccac 34465186  T
Q  441 aacacatccttcatactttttagccatg 468  Q
    | ||| ||||||| | ||||| ||||||    
T  34465185 agcacgtccttcacattttttcgccatg 34465158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 244 - 459
Target Start/End: Complemental strand, 4677674 - 4677459
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    ||||||||||||||||||| || ||||   || | ||||||||| ||||||| |||||||||||||||||| | ||| ||||||||| |||||||||||     
T  4677674 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttg 4677575  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaac 443  Q
    ||||||||||||| ||||||| ||| ||||| |||| |   || | |||| ||||||| || ||||| || || || || || || |||||||||||| |    
T  4677574 ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc 4677475  T
Q  444 acatccttcatacttt 459  Q
    || |||||||||||||    
T  4677474 acgtccttcatacttt 4677459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 15596060 - 15596162
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaa 376  Q
    |||||| |||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||| |||| |||||||||||||| || ||||| |    
T  15596060 gcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcga 15596159  T
Q  377 ctc 379  Q
    |||    
T  15596160 ctc 15596162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 52549183 - 52549098
Alignment:
Q  51 caccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagca 136  Q
    |||| |||||||||||||||| ||| |||| ||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  52549183 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 52549098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 15595523 - 15595638
Alignment:
Q  30 taatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaac-aacttgatcactaaacttcctaccaattaacc 128  Q
    ||||||| ||||||||||| ||||||    |||||||||||||||||||| ||||||||| |||||| |||   |||||||||||||||||  ||||| |    
T  15595523 taatcatgggtttgtcattcacaccaa---tgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatc 15595619  T
Q  129 tcttagcatctgcaaaaat 147  Q
    |||||||||||| ||||||    
T  15595620 tcttagcatctgaaaaaat 15595638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 4678253 - 4678126
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    |||||||||  ||||||| ||||| |||||  ||||||   ||||| | |||||||||||||| || || | |||||||||   ||||||| || |||||    
T  4678253 gtacttaacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacagaatcactatacctccta 4678154  T
Q  119 ccaattaacctcttagcatctgcaaaaa 146  Q
    ||||||||||||||||||||||||||||    
T  4678153 ccaattaacctcttagcatctgcaaaaa 4678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 34466487 - 34466362
Alignment:
Q  20 tacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctac 119  Q
    ||||||| || |||||| || |||||||| ||||||||| | || ||||||||||| ||||| |||||   ||||||| |  |||||||||| || || |    
T  34466487 tacttaagggaaatcattggcttgtcattaacaccagcaataactttgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgc 34466388  T
Q  120 caattaacctcttagcatctgcaaaa 145  Q
    ||||||||||||||||||||| ||||    
T  34466387 caattaacctcttagcatctgaaaaa 34466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 42554320 - 42554186
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    ||||||||||||||||||| ||||||   || | ||||| ||| |||||||||||||||||||||| ||  | ||| ||||||||| ||||||||||| |    
T  42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactc 379  Q
    |||||||||||| ||||||||||| ||||||||||    
T  42554220 tttgttgccttgatcattgtgaataatctcaactc 42554186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 28220465 - 28220551
Alignment:
Q  60 tgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatctgcaaaaa 146  Q
    |||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| |||||    
T  28220465 tgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 244 - 451
Target Start/End: Original strand, 28220915 - 28221122
Alignment:
Q  244 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtta 343  Q
    ||||||||||| || ||||| ||||||   || | |||||| || |||||||| ||||||||||||| ||| |  |||||||||||| ||||||| |||     
T  28220915 ttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttg 28221014  T
Q  344 ttttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaac 443  Q
    ||||||||||||| ||||||||||| |||||||| |     ||||  || |||||||| || ||||| || || ||||| || || |||||||||||| |    
T  28221015 ttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcccacagc 28221114  T
Q  444 acatcctt 451  Q
    ||||||||    
T  28221115 acatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 42555598 - 42555530
Alignment:
Q  60 tgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacc 128  Q
    |||||||||||||||||||| | || |||| ||||||||| | |||| |||||||||||||||||||||    
T  42555598 tgaccttgaatggccacaacttcatgtcattttgaacaacataatcattaaacttcctaccaattaacc 42555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 28911068 - 28911176
Alignment:
Q  32 atcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttcctaccaattaacctct 131  Q
    ||||| || |||||||||||||| ||| |||||||||| ||| ||||||||  ||| | |||||||||  ||||||||||||||||| |||||| |||||    
T  28911068 atcatggggttgtcattgacaccggcaatgaccttgaacggcgacaacattgaatcgttttgaacaacgggatcactaaacttcctatcaattatcctct 28911167  T
Q  132 tagcatctg 140  Q
    |||||||||    
T  28911168 tagcatctg 28911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 28911318 - 28911352
Alignment:
Q  280 tgattcttggcagcatcaccaatcaacctttgatc 314  Q
    |||||||| ||||||||||||||||||||||||||    
T  28911318 tgattcttagcagcatcaccaatcaacctttgatc 28911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 277 - 467
Target Start/End: Original strand, 12529869 - 12530059
Alignment:
Q  277 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttattttgttgccttggtcattgtgaatgatctcaa 376  Q
    |||||||| |||||||||| ||||||||| || |||   ||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| || || |    
T  12529869 gcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcca 12529968  T
Q  377 ctcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccacaacacatccttcatactttttagccat 467  Q
    | ||   |  |||||| ||||| ||| | ||||| ||||| |||||||| || || ||||| | | ||  ||||||||||||||| |||||    
T  12529969 cacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcatacttttttgccat 12530059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 43745320 - 43745441
Alignment:
Q  19 gtacttaacggtaatcataggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttgatcactaaacttccta 118  Q
    ||||||||| | |||||  ||||||||||| |  || | | |||||||||| ||||||||| | ||||||| ||||||| |   |||| |||||||||||    
T  43745320 gtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcatatcattttgaacatcagaatcattaaacttccta 43745419  T
Q  119 ccaattaacctcttagcatctg 140  Q
    ||||||||||||||||||||||    
T  43745420 ccaattaacctcttagcatctg 43745441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 245 - 440
Target Start/End: Original strand, 43745793 - 43745985
Alignment:
Q  245 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttat 344  Q
    |||||||||  |||||||||||||||   || | ||||||||| ||||| ||||| |||||||||| ||  | ||| ||||||||| |||||| ||||      
T  43745793 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaagttgtt-- 43745890  T
Q  345 tttgttgccttggtcattgtgaatgatctcaactcggcaatgttgctcctgccacactgcgacacaagagtatgttgtgccgaggtctattcccac 440  Q
     ||||||||||| ||||||||||| ||||||||||     ||||  || |||||||| || ||||| || || ||||| || ||||||||||||||    
T  43745891 -ttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcccac 43745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 12528996 - 12529103
Alignment:
Q  38 ggtttgtcattgacaccagcagtgaccttgaatggccacaacattatatcatcttgaacaacttga-tcactaaacttcctaccaattaacctcttagca 136  Q
    |||||||||||  |||||||||||||||| ||||||||||||| |  ||| |  ||||| | | || |||||| |||| || |||||||||||||| |||    
T  12528996 ggtttgtcattagcaccagcagtgaccttaaatggccacaacagttgatccttctgaacta-tggagtcactatactttcttccaattaacctctttgca 12529094  T
Q  137 tctgcaaaa 145  Q
    |||||||||    
T  12529095 tctgcaaaa 12529103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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