View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_43 (Length: 346)
Name: NF12023_high_43
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 25671514 - 25671195
Alignment:
| Q |
11 |
caaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671514 |
caaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaa |
25671415 |
T |
|
| Q |
111 |
tgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25671414 |
tgggcagtgaattcagctttcatggcactatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatggcttttggtgatgaacttt |
25671315 |
T |
|
| Q |
211 |
taccgttctggggtaaaggtgcaccggctttaggacaaaaatttcttgttgctagagcgaaagtacctgcaagtactcactattacaagaatggtgttga |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671314 |
tacctttctggggtaaaggtgcaccggctttaggacaaaaatttcttgttgctagagcaaaagtacctgcaagtactcactattacaagaatggtgttga |
25671215 |
T |
|
| Q |
311 |
tattgaaacacctatggaag |
330 |
Q |
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|||||||||||||||||||| |
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| T |
25671214 |
tattgaaacacctatggaag |
25671195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 5625722 - 5625476
Alignment:
| Q |
11 |
caaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaa |
110 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| || ||||||||||||||||| || || ||||||||| |
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| T |
5625722 |
caaaggagacaactcatggcaaatgacagcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaagaaa |
5625623 |
T |
|
| Q |
111 |
tgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttt |
210 |
Q |
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||||| |||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||||| | ||| | |||||||||||||| ||||||| |
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| T |
5625622 |
tgggctatgaattcagctttcatggcactttatgcttatgcatcagtgctaatatgttgggttcttttatgttaccgtatggcttttggtgatgaacttt |
5625523 |
T |
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| Q |
211 |
taccgttctggggtaaaggtgcaccggctttaggacaaaaatttctt |
257 |
Q |
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| || || ||||||||||||||||| | ||||| |||||||||||| |
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| T |
5625522 |
ttccattttggggtaaaggtgcaccttcattaggtcaaaaatttctt |
5625476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 39726975 - 39726730
Alignment:
| Q |
11 |
caaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaa |
110 |
Q |
| |
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||||||||||||| |||||||||||| | |||| || || ||||| | |||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
39726975 |
caaaggagacaactcatggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaaaagaaa |
39726876 |
T |
|
| Q |
111 |
tgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggtt-cttgttgcttatagaatggcttttggtgacgaactt |
209 |
Q |
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||||| || || || ||||||||||| || || ||||| || || ||| |||||||||||||| | || ||||||| ||| | |||||||| ||||| |
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| T |
39726875 |
tgggctgtaaactctgctttcatggctctctacgctttcgcggcggttataatctgttgggttacatg-ggcttataagatgtcatttggtgaaaaactt |
39726777 |
T |
|
| Q |
210 |
ttaccgttctggggtaaaggtgcaccggctttaggacaaaaatttct |
256 |
Q |
| |
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||||| || |||||||||| || || |||||||| || |||||||| |
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| T |
39726776 |
ttacccttttggggtaaagctggccctgctttaggccagaaatttct |
39726730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 13350291 - 13350166
Alignment:
| Q |
102 |
aaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtg |
201 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||| ||||| |||||| || || ||||||||||| || |||||||||||| | ||||||| |
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| T |
13350291 |
aaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgttgggttttttgggcttatagaatgtcatttggtg |
13350192 |
T |
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| Q |
202 |
acgaacttttaccgttctggggtaaa |
227 |
Q |
| |
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| |||||| || || ||||||||| |
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| T |
13350191 |
atacactttttccattttggggtaaa |
13350166 |
T |
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