View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_44 (Length: 343)
Name: NF12023_high_44
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 36722808 - 36722486
Alignment:
| Q |
18 |
gagactgcagctgcggccgctcagaatcctcagcctctggttgctgttgataatcgtcgggctgaggttttgaaatttgttgagcctgaagttgttcagg |
117 |
Q |
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| T |
36722808 |
gagactgcagctgcggccgctcagaatcctcagcctttggttgctgttgataaccgtcgggctgaggttttgaaatttgttgaacctgaagttgttcagg |
36722709 |
T |
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| Q |
118 |
ttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722708 |
ttaattggcctacttcaagcagtatgagtagtactgttgaatctttgagtgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttc |
36722609 |
T |
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| Q |
218 |
cagggttcctattgt---------tggtggtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattca |
308 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
36722608 |
cagggttcctattgttgctggtgctggtggtggagctgctcaacctgttggtgctgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattca |
36722509 |
T |
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| Q |
309 |
tctacatctgctgttgatgatga |
331 |
Q |
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| T |
36722508 |
tctacatctgctgttgatgatga |
36722486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 36709939 - 36709614
Alignment:
| Q |
18 |
gagactgcagctgcggccgctcagaatcctcagcctctggttgctgttgataatcgtcgggctgaggttttgaaatttgttgagcctgaagttgttcagg |
117 |
Q |
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||||||||||| | ||||||||| ||||||||||||| || |||||||||||| || | ||||||||||||||||||||||||||| || |||||||||| |
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| T |
36709939 |
gagactgcagccgtggccgctcaaaatcctcagcctccggctgctgttgataaccggccggctgaggttttgaaatttgttgagccagatgttgttcagg |
36709840 |
T |
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| Q |
118 |
ttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttc |
217 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
36709839 |
ttaattggcctacttcaagcggtatgagtagtaccgttgagtctttcagtgggcctaggattgttcagcttgttggttcttcgtcttcttctgttgtttc |
36709740 |
T |
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| Q |
218 |
cagggttcctattgttggtg------------gtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgat |
305 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||| ||||||| ||| | ||||||||||| |||||| |
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| T |
36709739 |
cagggttcctactgttggtggtggtgctggtggtggagttgctcaagctgttggtggtgctggtgctggtgctggtgaagattttcatagtggttgtgat |
36709640 |
T |
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| Q |
306 |
tcatctacatctgctgttgatgatga |
331 |
Q |
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|||||| |||||| |||||||||||| |
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| T |
36709639 |
tcatcttcatctgttgttgatgatga |
36709614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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