View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_high_53 (Length: 313)

Name: NF12023_high_53
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_high_53
NF12023_high_53
[»] chr3 (2 HSPs)
chr3 (53-295)||(33633523-33633765)
chr3 (54-108)||(7675526-7675579)
[»] chr6 (1 HSPs)
chr6 (54-106)||(22607124-22607175)
[»] chr1 (3 HSPs)
chr1 (54-121)||(35844080-35844148)
chr1 (54-84)||(25942556-25942586)
chr1 (54-87)||(8904841-8904874)
[»] chr7 (1 HSPs)
chr7 (56-90)||(19988427-19988461)
[»] chr8 (2 HSPs)
chr8 (53-90)||(27831678-27831715)
chr8 (54-90)||(7888558-7888594)
[»] chr5 (1 HSPs)
chr5 (54-87)||(36855354-36855387)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 53 - 295
Target Start/End: Complemental strand, 33633765 - 33633523
Alignment:
Q  53 cttcaattctttttaaatgaaaaattgtcaagattatatcaggacctccgaattgttgtagatgaccctgaccaaatgagtatttaaaaatgaaaattca 152  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33633765 cttcaattctttttaaatgaaaagttgtcaagattatatcaggacctccgaattgttgtagatgaccctgaccaaatgagtatttaaaaatgaaaattca 33633666  T
Q  153 gtattaaatgcactttaggaccggagggactagaggtactatactgatatttgaaatcttggaaacaaccgctgcccatttgtcatcccacgacatcagc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33633665 gtattaaatgcactttaggaccggagggactagaggtactatactgatatttgaaatcttggaaacaaccgctgcccatttgtcatcccacgacatcagc 33633566  T
Q  253 tccatcatgcccatatgctgacttcctcataagaaccagacaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33633565 tccatcatgcccatatgctgacttcctcataagaaccagacaa 33633523  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 7675579 - 7675526
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaagattatatcaggacctccgaattgt 108  Q
    |||||||| |||||||| |||||||||||||| ||||  ||||||||||||||||    
T  7675579 ttcaattcattttaaat-aaaaattgtcaagactataataggacctccgaattgt 7675526  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 22607175 - 22607124
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaagattatatcaggacctccgaatt 106  Q
    |||||| |||||||||| ||||||||||||||||||| |||| ||||||||||    
T  22607175 ttcaatactttttaaat-aaaaattgtcaagattataacagggcctccgaatt 22607124  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 35844080 - 35844148
Alignment:
Q  54 ttcaattctttttaaatg-aaaaattgtcaagattatatcaggacctccgaattgttgtagatgaccct 121  Q
    |||||||||||||||||| ||||||||||||||||||| |||   |||| |||||||| ||| ||||||    
T  35844080 ttcaattctttttaaatgaaaaaattgtcaagattataacagagtctccaaattgttggagacgaccct 35844148  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 25942586 - 25942556
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaag 84  Q
    |||||||||||||||||||||||||||||||    
T  25942586 ttcaattctttttaaatgaaaaattgtcaag 25942556  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 8904841 - 8904874
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaagatt 87  Q
    ||||||| ||||||||||||||||||||||||||    
T  8904841 ttcaattatttttaaatgaaaaattgtcaagatt 8904874  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 19988427 - 19988461
Alignment:
Q  56 caattctttttaaatgaaaaattgtcaagattata 90  Q
    ||||||||||||||| |||||||||||||||||||    
T  19988427 caattctttttaaataaaaaattgtcaagattata 19988461  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 27831678 - 27831715
Alignment:
Q  53 cttcaattctttttaaatgaaaaattgtcaagattata 90  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  27831678 cttcaattctttttaagagaaaaattgtcaagattata 27831715  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 7888558 - 7888594
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaagattata 90  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  7888558 ttcaattatttttaaaggaaaaattgtcaagattata 7888594  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 36855354 - 36855387
Alignment:
Q  54 ttcaattctttttaaatgaaaaattgtcaagatt 87  Q
    ||||||| ||||||||||||||||||||||||||    
T  36855354 ttcaattatttttaaatgaaaaattgtcaagatt 36855387  T

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