View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_high_60 (Length: 303)
Name: NF12023_high_60
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 37924461 - 37924185
Alignment:
| Q |
17 |
aacaaggatcctaggcattcactttgacaccaataataattaggaaaaaacaaatcaaataacaagtatctatgacatgtcggtgttggacacaacaccg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37924461 |
aacaaggatcctaggcattcactttgacaccaataataattaggaaaaaacaaatcaaataacaagtatctatgacatgtcggtgttggacacaacaccg |
37924362 |
T |
|
| Q |
117 |
aacatactccggacaccggatacgactacaaagtactagatctttagacacactttcaactaattgagcaaaagaaagagtacttacgtattgttctttc |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37924361 |
aacatactccggacacaggatacgactacaaagtactagatctttagacacactttcaactaattgagcaaaagaaagagtacttacgtattgttctttc |
37924262 |
T |
|
| Q |
217 |
ccgtattgctctttccttttgagtcttttttacaccagtggtctttctctttctcttcactgttccatcactttcat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37924261 |
ccgtattgctctttccttttgagtcttttttacaccagtggtctttctctttctcttcactgttccatcactttcat |
37924185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University