View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_68 (Length: 268)
Name: NF12023_high_68
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_68 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 2174941 - 2175047
Alignment:
| Q |
159 |
attctttaacaagtttctcaaaagcatgtgttagcaaaacccttagtaaccaaacatcgtgcaatcaaaatcaacatcagtagctcccaaatgaatatct |
258 |
Q |
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| T |
2174941 |
attctttaaccagtttctcaaaagcatgtgttagcaaaacccttagcaaccaaacatcgtgcaatcaaaatcaatatcagtagctcccaaataaatatct |
2175040 |
T |
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| Q |
259 |
ccgaaat |
265 |
Q |
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|||||| |
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| T |
2175041 |
tcgaaat |
2175047 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 2174789 - 2174876
Alignment:
| Q |
8 |
caaaggtccatttccatcacaattt-gttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatgaaacaaattg |
94 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2174789 |
caaaggtccatttccatcacaattttgttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatgaaacaaattg |
2174876 |
T |
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