View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_high_73 (Length: 257)

Name: NF12023_high_73
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12023_high_73
NF12023_high_73
[»] chr1 (6 HSPs)
chr1 (17-155)||(46127992-46128130)
chr1 (222-257)||(20304920-20304955)
chr1 (222-257)||(51737745-51737780)
chr1 (224-257)||(41876234-41876267)
chr1 (225-257)||(18404688-18404720)
chr1 (225-257)||(36966501-36966533)
[»] scaffold0228 (2 HSPs)
scaffold0228 (222-257)||(16224-16259)
scaffold0228 (222-257)||(26176-26211)
[»] chr6 (5 HSPs)
chr6 (222-257)||(17705259-17705294)
chr6 (225-257)||(28675388-28675420)
chr6 (225-257)||(29693686-29693718)
chr6 (225-257)||(32702445-32702477)
chr6 (225-257)||(33696937-33696969)
[»] chr4 (6 HSPs)
chr4 (222-257)||(47290306-47290341)
chr4 (223-257)||(22199499-22199533)
chr4 (225-257)||(11314044-11314076)
chr4 (225-257)||(31078612-31078644)
chr4 (225-257)||(46442084-46442116)
chr4 (225-257)||(53123271-53123303)
[»] chr3 (10 HSPs)
chr3 (222-257)||(22426135-22426170)
chr3 (222-257)||(33114034-33114069)
chr3 (224-257)||(36864824-36864857)
chr3 (225-257)||(3137207-3137239)
chr3 (225-257)||(3456304-3456336)
chr3 (225-257)||(6042117-6042149)
chr3 (225-257)||(34482681-34482713)
chr3 (225-257)||(37216846-37216878)
chr3 (225-257)||(40328072-40328104)
chr3 (225-257)||(48161146-48161178)
[»] chr2 (2 HSPs)
chr2 (222-257)||(22592953-22592988)
chr2 (224-257)||(13355088-13355121)
[»] chr8 (2 HSPs)
chr8 (223-257)||(1645755-1645789)
chr8 (222-254)||(31347566-31347598)
[»] chr7 (2 HSPs)
chr7 (223-257)||(15577638-15577672)
chr7 (225-257)||(3962218-3962250)
[»] chr5 (1 HSPs)
chr5 (223-257)||(25398478-25398512)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 46128130 - 46127992
Alignment:
Q  17 agttgttgagtcggagaatcactgtcgacaaagaggttggagaatcgcaggtatcattgactacgtgatggtttttcagcattattgagaaaggccggcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46128130 agttgttgagtcggagaatcactgtcgacaaagaggttggagaatcgcaggtatcattgactacgtgatggtttttcagcattattgagaaaggccggcc 46128031  T
Q  117 attccttcaactatacttccaaaatcttatcccaaagta 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46128030 attccttcaactatacttccaaaatcttatcccaaagta 46127992  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 20304920 - 20304955
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20304920 aaaaaggaaaatgctagatatcaagaatgattttat 20304955  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 51737780 - 51737745
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51737780 aaaaaggaaaatgctagatatcaagaatgattttat 51737745  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 41876234 - 41876267
Alignment:
Q  224 aaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||| ||||||||||||||||||||||||    
T  41876234 aaaggaaaatgctagatatcaagaatgattttat 41876267  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 18404720 - 18404688
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  18404720 aaggaaaatgctagatatcaagaatgattttat 18404688  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 36966501 - 36966533
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  36966501 aaggaaaatgctagatatcaagaatgattttat 36966533  T

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Target: scaffold0228 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 16259 - 16224
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16259 aaaaaggaaaatgctagatatcaagaatgattttat 16224  T

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Target: scaffold0228; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 26211 - 26176
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26211 aaaaaggaaaatgctagatatcaagaatgattttat 26176  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 17705259 - 17705294
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17705259 aaaaaggaaaatgctagatatcaagaatgattttat 17705294  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 28675420 - 28675388
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  28675420 aaggaaaatgctagatatcaagaatgattttat 28675388  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 29693718 - 29693686
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  29693718 aaggaaaatgctagatatcaagaatgattttat 29693686  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 32702477 - 32702445
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  32702477 aaggaaaatgctagatatcaagaatgattttat 32702445  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 33696969 - 33696937
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  33696969 aaggaaaatgctagatatcaagaatgattttat 33696937  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 47290341 - 47290306
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47290341 aaaaaggaaaatgctagatatcaagaatgattttat 47290306  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 22199533 - 22199499
Alignment:
Q  223 aaaaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  22199533 aaaaggaaaatgctagatatcaagaatgattttat 22199499  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 11314044 - 11314076
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  11314044 aaggaaaatgctagatatcaagaatgattttat 11314076  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 31078612 - 31078644
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  31078612 aaggaaaatgctagatatcaagaatgattttat 31078644  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 46442116 - 46442084
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  46442116 aaggaaaatgctagatatcaagaatgattttat 46442084  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 53123303 - 53123271
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  53123303 aaggaaaatgctagatatcaagaatgattttat 53123271  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 22426135 - 22426170
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22426135 aaaaaggaaaatgctagatatcaagaatgattttat 22426170  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 33114069 - 33114034
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33114069 aaaaaggaaaatgctagatatcaagaatgattttat 33114034  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 36864824 - 36864857
Alignment:
Q  224 aaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||| ||||||||||||||||||||||||    
T  36864824 aaaggaaaatgctagatatcaagaatgattttat 36864857  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 3137207 - 3137239
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  3137207 aaggaaaatgctagatatcaagaatgattttat 3137239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 3456336 - 3456304
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  3456336 aaggaaaatgctagatatcaagaatgattttat 3456304  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 6042149 - 6042117
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  6042149 aaggaaaatgctagatatcaagaatgattttat 6042117  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 34482681 - 34482713
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  34482681 aaggaaaatgctagatatcaagaatgattttat 34482713  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 37216846 - 37216878
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  37216846 aaggaaaatgctagatatcaagaatgattttat 37216878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 40328104 - 40328072
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  40328104 aaggaaaatgctagatatcaagaatgattttat 40328072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 48161178 - 48161146
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  48161178 aaggaaaatgctagatatcaagaatgattttat 48161146  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 22592988 - 22592953
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22592988 aaaaaggaaaatgctagatatcaagaatgattttat 22592953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 13355121 - 13355088
Alignment:
Q  224 aaaggaaaacgctagatatcaagaatgattttat 257  Q
    ||||||||| ||||||||||||||||||||||||    
T  13355121 aaaggaaaatgctagatatcaagaatgattttat 13355088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 1645755 - 1645789
Alignment:
Q  223 aaaaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  1645755 aaaaggaaaatgctagatatcaagaatgattttat 1645789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 31347566 - 31347598
Alignment:
Q  222 aaaaaggaaaacgctagatatcaagaatgattt 254  Q
    ||||||||||| |||||||||||||||||||||    
T  31347566 aaaaaggaaaatgctagatatcaagaatgattt 31347598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 15577638 - 15577672
Alignment:
Q  223 aaaaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  15577638 aaaaggaaaatgctagatatcaagaatgattttat 15577672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 3962250 - 3962218
Alignment:
Q  225 aaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||| ||||||||||||||||||||||||    
T  3962250 aaggaaaatgctagatatcaagaatgattttat 3962218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 25398512 - 25398478
Alignment:
Q  223 aaaaggaaaacgctagatatcaagaatgattttat 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  25398512 aaaaggaaaatgctagatatcaagaatgattttat 25398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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