View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_85 (Length: 242)
Name: NF12023_high_85
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_85 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 391930 - 392005
Alignment:
| Q |
19 |
cacatgtgtcggtctcatccaagttttaaacttataagcatattagtccttttatttttcacaaaggtaatttcat |
94 |
Q |
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| T |
391930 |
cacatgtgtcggtctcatccaagttttaaacttataagcatattagtccttttatttttcacaaaggtaatttcat |
392005 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 392283 - 392352
Alignment:
| Q |
152 |
ttaatttattagcaaataaagcaaaggtgacctcagaaatcagattgaacagtaacaatgaggttaataa |
221 |
Q |
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| T |
392283 |
ttaatttattagcaaataaagcaaaggtgacctcagaaatcagattgaacagtaacaatgaggttaataa |
392352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 392028 - 392095
Alignment:
| Q |
93 |
attgcatcttacaaatcaactaaacaattaaattacatacctaacttaaaataataattttaatttat |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
392028 |
attgcatcttacaaatcaactaaacaattaaattacatacctaacttaaaattataattttaatttat |
392095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 21835939 - 21835878
Alignment:
| Q |
160 |
ttagcaaataaagcaaaggtgacctcagaaatcagattgaacagtaacaatgaggttaataa |
221 |
Q |
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|||||||| |||||| |||| ||||||| ||| ||| | || |||||||||||||||||||| |
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| T |
21835939 |
ttagcaaacaaagcataggtaacctcagcaattagaataaagagtaacaatgaggttaataa |
21835878 |
T |
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