View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12023_high_89 (Length: 240)
Name: NF12023_high_89
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_89 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14738963 - 14738740
Alignment:
| Q |
1 |
accattatagtgcccaacaaacactgttgcaatcctaagtataagccaaatttccaatttttctgatgggaataattacgtaaaagtaacacaagtttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14738963 |
accattatagtgcccaacaaacactgttgcaatcctaagtataagccaaatttccaatttttctgatgggaataattacgtaaaagtaacacaagtttat |
14738864 |
T |
|
| Q |
101 |
ttaccacaagtacttttgaacttttcttgtaataatgatgatgtagtaaaataaatactcctgaagaaaacgggaacttatttttactgtcacacgctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14738863 |
ttaccacaagtacttttgaacttttcttgtaataatgaggatgtagtaaaataaatactcctgaagaaaacgggaacttattttcactgtcacacgctgg |
14738764 |
T |
|
| Q |
201 |
taataatgaggatatagtataaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14738763 |
taataatgaggatatagtataaat |
14738740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 14744932 - 14744779
Alignment:
| Q |
41 |
ataagccaaatttccaatttttctgatgggaataattacgtaaaagtaacacaagtttatttaccacaagtacttttgaacttttcttgtaataatgatg |
140 |
Q |
| |
|
||||| ||| |||||||| |||| ||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
14744932 |
ataagacaattttccaatatttcggataggagtaattacgtaaaagtaacacaggtttatttactacaagtacttttgaacttttcttgtaataatgagg |
14744833 |
T |
|
| Q |
141 |
atgtagt-aaaataaatactcctgaagaaaacgggaacttatttttactgtcac |
193 |
Q |
| |
|
||||||| ||||| ||||||| || ||||||||| |||||||| ||||||| |
|
|
| T |
14744832 |
atgtagtaaaaatcaatactcgcgagtaaaacgggaccttattttcgctgtcac |
14744779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University