View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_high_95 (Length: 238)
Name: NF12023_high_95
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_high_95 |
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Alignment Details
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 9930950 - 9930991
Alignment:
| Q |
176 |
catatttgacattcttttgaggagttaaggaacctacgacaaaga |
220 |
Q |
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| T |
9930950 |
catatttgacattcttttgag---ttaaggaacctacgacaaaga |
9930991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 9930906 - 9930934
Alignment:
| Q |
127 |
ttatgtttttcctagtttaatagttcttg |
155 |
Q |
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| T |
9930906 |
ttatgtttttcctagtttaatagttcttg |
9930934 |
T |
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