View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12023_low_10 (Length: 559)
Name: NF12023_low_10
Description: NF12023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12023_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Complemental strand, 49350824 - 49350289
Alignment:
| Q |
18 |
acatacagtaacttcggttatgcggtggcgaaaattgacttttaacttaaaaacacatgtggtacacataatgtaaaggagaaaatctttgagcaaagat |
117 |
Q |
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| T |
49350824 |
acatacagtaacttcggttatgcggtggcgaaaattgacttttaacttaaaaacacatgtggtacacataatgtaaaggagaaaatctttgagcaaagat |
49350725 |
T |
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| Q |
118 |
cagcaagggcattaaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaattttttagca |
217 |
Q |
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| T |
49350724 |
cagcaagggcatttaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaaaaatttagca |
49350625 |
T |
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| Q |
218 |
ctgaagattagttaccaaagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaattaaacat |
317 |
Q |
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| T |
49350624 |
ctgaagattagttaccagagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaattaaacat |
49350525 |
T |
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| Q |
318 |
taatgga-ttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaa |
416 |
Q |
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| T |
49350524 |
taatggagttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaa |
49350425 |
T |
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| Q |
417 |
ccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
516 |
Q |
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| T |
49350424 |
ccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
49350325 |
T |
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| Q |
517 |
tgttttaaccttggaggaagtattctacctatgcta |
552 |
Q |
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| T |
49350324 |
tgttttaacattggaggaagtattctacctatgcta |
49350289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 516
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
421 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
516 |
Q |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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