View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12023_low_105 (Length: 227)

Name: NF12023_low_105

Description: NF12023

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12023_low_105

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 22 - 158

Target Start/End: Original strand, 41222055 - 41222191

Alignment:

Q	22	atggatagatttctcatattcacttgacatatgagaatagagattctctcaattgaaatcctcattctttctaaattgttagttacatctcaaccataaa	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41222055	atggatagatttctcatattcacgtgacatatgagaatagagattctctcaattgaaatcctcattctttctaaattgttagttacatctcaaccataaa	41222154	T

Q	122	attcaatctctcaattgattcttttcgatgtagttcg	158	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41222155	attcaatctctcaattgattcttttcgatgtagttcg	41222191	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 107 - 158

Target Start/End: Original strand, 1293399 - 1293451

Alignment:

Q	107	catctcaaccataaaattcaatctctcaattgattctttt-cgatgtagttcg	158	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	1293399	catctcaaccatcaaattcaatctctcaatcggttcttttacaatgtagttcg	1293451	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]